Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4579 and PP_4580 are separated by 72 nucleotides PP_4580 and PP_4581 are separated by 9 nucleotides PP_4581 and PP_4582 are separated by 14 nucleotides
PP_4579: PP_4579 - Transcriptional regulator, LysR family, at 5,198,714 to 5,199,625
_4579
PP_4580: PP_4580 - conserved protein of unknown function, at 5,199,698 to 5,200,219
_4580
PP_4581: PP_4581 - putative amidotransferase, at 5,200,229 to 5,201,002
_4581
PP_4582: PP_4582 - conserved membrane protein of unknown function, at 5,201,017 to 5,201,514
_4582
Position (kb) 5199
5200
5201 Strain fitness (log2 ratio) -1
0
1
2
3 at 5198.905 kb on - strand, within PP_4579 at 5198.905 kb on - strand, within PP_4579 at 5198.905 kb on - strand, within PP_4579 at 5198.913 kb on - strand, within PP_4579 at 5199.007 kb on + strand, within PP_4579 at 5199.007 kb on + strand, within PP_4579 at 5199.008 kb on - strand, within PP_4579 at 5199.008 kb on - strand, within PP_4579 at 5199.139 kb on + strand, within PP_4579 at 5199.139 kb on + strand, within PP_4579 at 5199.139 kb on + strand, within PP_4579 at 5199.140 kb on - strand, within PP_4579 at 5199.140 kb on - strand, within PP_4579 at 5199.140 kb on - strand, within PP_4579 at 5199.245 kb on + strand, within PP_4579 at 5199.245 kb on + strand, within PP_4579 at 5199.246 kb on - strand, within PP_4579 at 5199.246 kb on - strand at 5199.246 kb on - strand, within PP_4579 at 5199.682 kb on - strand at 5199.688 kb on - strand at 5199.827 kb on + strand, within PP_4580 at 5199.843 kb on + strand, within PP_4580 at 5199.843 kb on + strand, within PP_4580 at 5199.844 kb on - strand, within PP_4580 at 5199.850 kb on - strand, within PP_4580 at 5199.890 kb on + strand, within PP_4580 at 5200.138 kb on - strand, within PP_4580 at 5200.138 kb on - strand, within PP_4580 at 5200.138 kb on - strand, within PP_4580 at 5200.206 kb on + strand at 5200.207 kb on - strand at 5200.231 kb on - strand at 5200.231 kb on - strand at 5200.771 kb on + strand, within PP_4581 at 5200.772 kb on - strand, within PP_4581 at 5200.890 kb on - strand, within PP_4581 at 5201.002 kb on + strand at 5201.002 kb on + strand at 5201.003 kb on - strand at 5201.003 kb on - strand at 5201.003 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,198,905 - PP_4579 0.21 +0.4 5,198,905 - PP_4579 0.21 -0.5 5,198,905 - PP_4579 0.21 +1.0 5,198,913 - PP_4579 0.22 -0.5 5,199,007 + PP_4579 0.32 -0.1 5,199,007 + PP_4579 0.32 -0.2 5,199,008 - PP_4579 0.32 -0.2 5,199,008 - PP_4579 0.32 +0.6 5,199,139 + PP_4579 0.47 -0.2 5,199,139 + PP_4579 0.47 +0.4 5,199,139 + PP_4579 0.47 -0.4 5,199,140 - PP_4579 0.47 +0.3 5,199,140 - PP_4579 0.47 -0.4 5,199,140 - PP_4579 0.47 -0.1 5,199,245 + PP_4579 0.58 -0.2 5,199,245 + PP_4579 0.58 +0.2 5,199,246 - PP_4579 0.58 +0.9 5,199,246 - +3.1 5,199,246 - PP_4579 0.58 +0.2 5,199,682 - +0.5 5,199,688 - -0.5 5,199,827 + PP_4580 0.25 -0.5 5,199,843 + PP_4580 0.28 -0.7 5,199,843 + PP_4580 0.28 -0.4 5,199,844 - PP_4580 0.28 -0.0 5,199,850 - PP_4580 0.29 +0.3 5,199,890 + PP_4580 0.37 -1.0 5,200,138 - PP_4580 0.84 +0.1 5,200,138 - PP_4580 0.84 +0.1 5,200,138 - PP_4580 0.84 -0.1 5,200,206 + +0.5 5,200,207 - -1.0 5,200,231 - -0.5 5,200,231 - -0.7 5,200,771 + PP_4581 0.70 -0.1 5,200,772 - PP_4581 0.70 +0.3 5,200,890 - PP_4581 0.85 -0.2 5,201,002 + -0.1 5,201,002 + -0.3 5,201,003 - +0.2 5,201,003 - +0.1 5,201,003 - +1.0
Or see this region's nucleotide sequence