Strain Fitness in Pseudomonas putida KT2440 around PP_4065

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,588,326	-		PP_4064	0.16	-0.2
4,588,326	-		PP_4064	0.16	-0.3
4,588,347	-		PP_4064	0.18	-2.4
4,588,410	-		PP_4064	0.24	-0.4
4,588,592	+		PP_4064	0.39	-1.3
4,588,593	-		PP_4064	0.39	-0.2
4,588,593	-		PP_4064	0.39	+0.3
4,588,593	-		PP_4064	0.39	-0.7
4,588,646	+		PP_4064	0.44	+0.1
4,588,646	+		PP_4064	0.44	+0.8
4,588,646	+		PP_4064	0.44	+0.5
4,588,647	-		PP_4064	0.44	-0.4
4,588,647	-		PP_4064	0.44	-0.8
4,588,647	-		PP_4064	0.44	+0.3
4,588,647	-		PP_4064	0.44	-0.7
4,588,855	+		PP_4064	0.62	-0.4
4,588,856	-		PP_4064	0.62	-0.2
4,588,856	-		PP_4064	0.62	+0.1
4,588,871	+		PP_4064	0.63	+0.2
4,588,872	-		PP_4064	0.63	-1.3
4,588,872	-		PP_4064	0.63	-0.2
4,588,940	+		PP_4064	0.69	-0.6
4,588,940	+		PP_4064	0.69	-1.0
4,588,941	-		PP_4064	0.69	+0.1
4,588,941	-		PP_4064	0.69	-0.6
4,588,941	-		PP_4064	0.69	-0.2
4,588,941	-		PP_4064	0.69	+0.5
4,588,941	-		PP_4064	0.69	-0.7
4,589,015	+		PP_4064	0.76	-0.6
4,589,015	+		PP_4064	0.76	-1.1
4,589,015	+		PP_4064	0.76	-0.3
4,589,015	+		PP_4064	0.76	-0.8
4,589,015	+		PP_4064	0.76	-0.8
4,589,016	-				+0.3
4,589,016	-		PP_4064	0.76	+0.1
4,589,042	+		PP_4064	0.78	+0.2
4,589,048	+		PP_4064	0.78	+0.4
4,589,048	+		PP_4064	0.78	-0.1
4,589,049	-		PP_4064	0.78	-0.7
4,589,049	-		PP_4064	0.78	+0.1
4,589,177	+		PP_4064	0.89	-0.7
4,589,177	+		PP_4064	0.89	-1.0
4,589,177	+		PP_4064	0.89	-0.3
4,589,179	+		PP_4064	0.90	+0.4
4,589,179	+		PP_4064	0.90	+0.6
4,589,179	+		PP_4064	0.90	-1.0
4,589,180	-		PP_4064	0.90	+0.4
4,589,180	-		PP_4064	0.90	-0.7
4,589,180	-		PP_4064	0.90	-0.7
4,589,225	+				-0.2
4,589,303	+				-1.0
4,589,304	-				-0.4
4,589,324	+				-1.1
4,589,325	-				-0.4
4,589,325	-				-0.5
4,589,562	+		PP_4065	0.15	-0.2
4,589,563	-		PP_4065	0.15	-0.5
4,589,653	+		PP_4065	0.21	+0.5
4,589,654	-		PP_4065	0.21	-0.7
4,589,667	+		PP_4065	0.22	-0.9
4,589,667	+				+1.3
4,589,667	+		PP_4065	0.22	+0.7
4,589,668	-		PP_4065	0.22	-0.4
4,589,668	-		PP_4065	0.22	-0.5
4,589,668	-		PP_4065	0.22	-1.2
4,589,668	-		PP_4065	0.22	+0.5
4,589,739	+		PP_4065	0.26	+0.4
4,589,898	+		PP_4065	0.36	-2.1
4,589,898	+		PP_4065	0.36	+0.6
4,589,899	-		PP_4065	0.36	+0.2
4,589,899	-		PP_4065	0.36	+0.1
4,589,899	-		PP_4065	0.36	+0.7
4,590,061	-		PP_4065	0.46	-0.9
4,590,061	-		PP_4065	0.46	-0.4
4,590,169	-		PP_4065	0.53	-1.0
4,590,187	-		PP_4065	0.54	-0.3
4,590,471	+		PP_4065	0.72	-0.2
4,590,582	+		PP_4065	0.79	-1.2
4,590,583	-		PP_4065	0.79	-0.4
4,590,584	-		PP_4065	0.79	-0.4
4,590,792	+				-0.3
4,590,793	-				-0.5
4,590,796	-				+0.3
4,590,796	-				-0.6
4,591,213	-		PP_4066	0.35	+1.0
4,591,345	+		PP_4066	0.51	+1.3
4,591,345	+		PP_4066	0.51	-1.7
4,591,346	-		PP_4066	0.51	-1.7
4,591,420	-		PP_4066	0.60	-0.4
4,591,485	+		PP_4066	0.68	-0.3
4,591,486	-		PP_4066	0.68	-0.5
4,591,526	-		PP_4066	0.73	-0.5