Strain Fitness in Pseudomonas putida KT2440 around PP_2305

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,634,547	+		PP_2304	0.54	-0.5
2,634,547	+		PP_2304	0.54	+0.3
2,634,547	+		PP_2304	0.54	-1.8
2,634,547	+		PP_2304	0.54	-1.5
2,634,547	+		PP_2304	0.54	-0.4
2,634,548	-		PP_2304	0.54	+1.0
2,634,548	-		PP_2304	0.54	+2.0
2,634,548	-		PP_2304	0.54	+1.4
2,634,548	-		PP_2304	0.54	+0.0
2,634,570	-		PP_2304	0.55	+0.4
2,634,706	+		PP_2304	0.62	+0.6
2,634,706	+		PP_2304	0.62	-0.3
2,634,707	-		PP_2304	0.62	+0.7
2,634,707	-		PP_2304	0.62	+2.0
2,634,742	+		PP_2304	0.64	+1.0
2,635,127	-		PP_2304	0.85	-0.1
2,635,127	-				+1.0
2,635,222	+		PP_2304	0.90	+0.8
2,635,222	+		PP_2304	0.90	-0.2
2,635,223	-				+0.7
2,635,223	-				-0.8
2,635,328	-				-0.5
2,635,405	+				-1.3
2,635,406	-				+1.0
2,635,408	+				+1.4
2,635,408	+				-0.1
2,635,409	-				+0.3
2,635,409	-				-0.2
2,635,409	-				+0.2
2,635,546	+				-0.6
2,635,547	-				-0.3
2,635,547	-				+0.1
2,635,547	-				+0.4
2,635,607	-				+0.5
2,635,638	+		PP_2305	0.11	-0.1
2,635,638	+		PP_2305	0.11	+1.0
2,635,638	+		PP_2305	0.11	+0.3
2,635,638	+		PP_2305	0.11	+0.4
2,635,638	+		PP_2305	0.11	+0.0
2,636,225	+		PP_2305	0.67	+0.7
2,636,254	-		PP_2305	0.69	+0.8
2,636,422	+		PP_2305	0.85	+0.8
2,636,422	+		PP_2305	0.85	-0.6
2,636,423	-		PP_2305	0.86	-0.3
2,636,426	+		PP_2305	0.86	+1.0
2,636,427	-		PP_2305	0.86	+0.3
2,636,469	+				-0.7
2,636,469	+				-0.3
2,636,469	+				-0.1
2,636,469	+				+0.7
2,636,469	+				+0.2
2,636,470	-				-0.2
2,636,470	-				-0.1
2,636,561	+				+0.1
2,636,599	+				+0.8
2,636,600	-				+0.1
2,636,600	-				-0.2
2,636,600	-				-0.1
2,636,600	-				-0.6
2,636,600	-				-0.6
2,636,633	-				+0.4
2,636,647	+				+0.3
2,636,647	+				-0.3
2,636,647	+				+0.5
2,636,648	-				+0.7
2,636,655	+				+0.8
2,636,732	-				-0.2
2,636,737	+				-0.4
2,636,738	-				+0.3
2,636,738	-				-0.6
2,636,738	-				+0.3
2,636,740	+				-0.3
2,636,899	-		PP_2306	0.55	-0.3
2,636,995	-		PP_2306	0.90	+0.7
2,637,037	+				+0.8
2,637,037	+				-0.7
2,637,037	+				-0.6
2,637,037	+				-0.9
2,637,037	+				+0.3
2,637,038	-				+0.4
2,637,038	-				+0.8
2,637,038	-				-0.1
2,637,038	-				+0.5
2,637,038	-				-0.3
2,637,038	-				-0.1
2,637,038	-				-1.2
2,637,072	+				-0.4
2,637,124	+		PP_2307	0.11	-0.2
2,637,251	-		PP_2307	0.27	+0.2
2,637,456	+		PP_2307	0.54	+0.1