Strain Fitness in Pseudomonas putida KT2440 around PP_1389

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,584,415	+		PP_1388	0.59	+0.4
1,584,415	+		PP_1388	0.59	+0.1
1,584,415	+		PP_1388	0.59	+0.0
1,584,415	+		PP_1388	0.59	+0.3
1,584,416	-		PP_1388	0.59	+0.2
1,584,416	-		PP_1388	0.59	+1.3
1,584,584	-		PP_1388	0.70	+0.4
1,584,584	-		PP_1388	0.70	+0.0
1,584,599	-		PP_1388	0.71	-0.3
1,584,797	-		PP_1388	0.85	-0.2
1,584,817	+		PP_1388	0.86	-0.1
1,584,848	+		PP_1388	0.89	+1.1
1,584,848	+		PP_1388	0.89	-1.1
1,584,849	-		PP_1388	0.89	-0.3
1,584,849	-		PP_1388	0.89	-0.3
1,584,849	-		PP_1388	0.89	+0.0
1,584,849	-		PP_1388	0.89	-0.5
1,584,849	-		PP_1388	0.89	-0.5
1,584,849	-		PP_1388	0.89	-0.4
1,584,849	-		PP_1388	0.89	-0.5
1,584,850	+		PP_1388	0.89	+0.0
1,585,020	-				+0.2
1,585,034	-				+0.0
1,585,093	+				-0.7
1,585,093	+				-0.1
1,585,097	+				+0.6
1,585,106	-				+0.8
1,585,106	-				+0.2
1,585,109	+				+0.5
1,585,110	-				+0.2
1,585,112	+				-0.7
1,585,125	+				+0.4
1,585,126	-				+0.4
1,585,126	-				-0.5
1,585,175	+				-0.2
1,585,176	-				-0.3
1,585,233	-				+0.3
1,585,335	-				-0.7
1,585,335	-				-0.1
1,585,335	-				-1.1
1,585,361	-				-0.3
1,585,361	-				-1.2
1,585,562	-		PP_1389	0.20	-0.3
1,585,562	-		PP_1389	0.20	-0.2
1,585,885	+		PP_1389	0.57	-0.0
1,585,914	-		PP_1389	0.60	-0.0
1,585,924	-		PP_1389	0.61	-0.1
1,586,028	+		PP_1389	0.73	-1.0
1,586,028	+		PP_1389	0.73	-1.2
1,586,029	-		PP_1389	0.73	+1.2
1,586,029	-		PP_1389	0.73	-0.1
1,586,029	-		PP_1389	0.73	-0.8
1,586,106	+		PP_1389	0.82	-0.8
1,586,106	+		PP_1389	0.82	-1.0
1,586,107	-		PP_1389	0.82	-0.4
1,586,131	-		PP_1389	0.85	-0.3
1,586,131	-		PP_1389	0.85	-0.3
1,586,205	+				-0.0
1,586,206	-				+1.9
1,586,206	-				+0.2
1,586,206	-				-0.3
1,586,206	-				+1.4
1,586,244	+				-1.4
1,586,245	-				-0.5
1,586,245	-				+0.0
1,586,245	-				-0.3
1,586,341	-		PP_1390	0.31	-0.7
1,586,365	+		PP_1390	0.44	+0.0
1,586,397	-		PP_1390	0.62	+0.3
1,586,415	+		PP_1390	0.72	+2.2
1,586,490	+				-0.0
1,586,491	-				+0.4
1,586,491	-				+0.3
1,586,498	+				-0.2
1,586,498	+				-1.2
1,586,498	+				+0.0
1,586,498	+				+0.2
1,586,498	+				-0.6
1,586,499	-				-1.4
1,586,501	+				-0.5
1,586,501	+				-0.7
1,586,501	+				+0.2
1,586,502	-				-0.7
1,586,502	-				+1.1
1,586,503	+				-0.1
1,586,503	+				-0.6
1,586,503	+				-0.2
1,586,503	+				+0.4
1,586,503	+				-1.1
1,586,503	+				+0.4
1,586,503	+				+0.2
1,586,503	+				-0.2
1,586,503	+				-0.0
1,586,503	+				+0.8
1,586,503	+				+0.5
1,586,503	+				+0.9
1,586,503	+				+0.5
1,586,504	-				-0.4
1,586,504	-				-0.1
1,586,504	-				-0.0
1,586,504	-				+0.7
1,586,504	-				-0.7
1,586,595	+		PP_1391	0.11	-0.0
1,586,595	+		PP_1391	0.11	+0.6
1,586,595	+		PP_1391	0.11	-0.5
1,586,595	+		PP_1391	0.11	+1.4
1,586,596	-		PP_1391	0.11	-0.1
1,586,596	-		PP_1391	0.11	+0.6
1,586,596	-		PP_1391	0.11	+0.1
1,586,596	-		PP_1391	0.11	+0.3
1,586,598	-		PP_1391	0.11	-0.2
1,586,598	-		PP_1391	0.11	-0.2
1,586,598	-		PP_1391	0.11	+0.4
1,586,684	+		PP_1391	0.21	-1.5
1,586,703	+		PP_1391	0.23	+0.5
1,586,703	+		PP_1391	0.23	-0.3
1,586,703	+		PP_1391	0.23	+0.6
1,586,825	+		PP_1391	0.36	+0.1
1,586,826	-		PP_1391	0.36	-1.0
1,586,826	-		PP_1391	0.36	+0.3
1,586,826	-		PP_1391	0.36	-0.8
1,586,826	-		PP_1391	0.36	-1.4
1,587,065	+		PP_1391	0.62	+0.1
1,587,065	+		PP_1391	0.62	+0.1
1,587,066	-		PP_1391	0.63	+0.3
1,587,066	-		PP_1391	0.63	-0.3
1,587,108	+		PP_1391	0.67	+0.4
1,587,109	-		PP_1391	0.67	-0.2
1,587,109	-		PP_1391	0.67	+0.4
1,587,121	-		PP_1391	0.69	+0.6
1,587,121	-		PP_1391	0.69	-1.1