Strain Fitness in Pseudomonas putida KT2440 around PP_0912

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,052,925	-				+0.6
1,052,925	-		PP_0910	0.69	-0.0
1,052,972	+		PP_0910	0.72	-0.6
1,052,973	-		PP_0910	0.72	-0.5
1,052,999	-		PP_0910	0.74	-0.2
1,053,085	-		PP_0910	0.80	-0.2
1,053,162	+		PP_0910	0.86	-1.4
1,053,184	+		PP_0910	0.87	+0.1
1,053,218	+		PP_0910	0.90	-0.2
1,053,218	+		PP_0910	0.90	-1.2
1,053,219	-		PP_0910	0.90	-0.2
1,053,406	+				-0.7
1,053,406	+				+1.6
1,053,406	+				-0.9
1,053,484	+				+0.4
1,053,484	+				+0.4
1,053,484	+				+0.8
1,053,484	+				-0.4
1,053,485	-				+0.6
1,053,485	-				-0.5
1,053,485	-				-0.9
1,053,486	+				-0.1
1,053,486	+				+0.7
1,053,486	+				-1.5
1,053,486	+				+0.4
1,053,487	-				-0.5
1,053,487	-				-1.1
1,053,487	-				+1.0
1,053,487	-				+0.2
1,053,487	-				-0.0
1,053,487	-				-0.1
1,053,487	-				+0.4
1,053,487	-				-0.1
1,053,487	-				+0.6
1,053,547	+		PP_0911	0.18	-1.0
1,053,582	+		PP_0911	0.27	-0.1
1,053,583	-		PP_0911	0.28	+0.6
1,053,602	-		PP_0911	0.33	+0.0
1,053,639	+		PP_0911	0.42	+0.9
1,053,639	+		PP_0911	0.42	+0.0
1,053,650	+		PP_0911	0.45	+0.2
1,053,651	-		PP_0911	0.45	-0.5
1,053,814	+		PP_0911	0.87	+0.6
1,053,814	+		PP_0911	0.87	+0.4
1,053,814	+		PP_0911	0.87	+1.0
1,053,814	+		PP_0911	0.87	+0.2
1,053,814	+		PP_0911	0.87	-0.3
1,053,815	-		PP_0911	0.88	+0.4
1,053,815	-		PP_0911	0.88	-0.1
1,053,815	-		PP_0911	0.88	-0.9
1,053,815	-		PP_0911	0.88	+1.3
1,053,815	-		PP_0911	0.88	+0.9
1,053,815	-		PP_0911	0.88	+0.3
1,053,817	-		PP_0911	0.88	+0.6
1,053,827	-				-0.1
1,053,846	+				+0.5
1,053,847	-				+1.1
1,053,847	-				-0.6
1,053,847	-				+0.4
1,053,847	-				+0.3
1,053,847	-				+0.2
1,053,847	-				+0.0
1,053,928	+				+0.5
1,053,928	+				-1.1
1,053,929	-				+0.0
1,054,058	-		PP_0912	0.31	-0.1
1,054,058	-		PP_0912	0.31	+0.1
1,054,058	-		PP_0912	0.31	+0.1
1,054,064	-		PP_0912	0.32	+0.9
1,054,064	-		PP_0912	0.32	+0.2
1,054,086	+		PP_0912	0.36	-1.0
1,054,087	-		PP_0912	0.36	+0.6
1,054,186	+		PP_0912	0.53	+0.7
1,054,187	-		PP_0912	0.53	-0.3
1,054,187	-		PP_0912	0.53	+0.2
1,054,192	+		PP_0912	0.54	+0.7
1,054,193	-		PP_0912	0.54	+0.5
1,054,193	-		PP_0912	0.54	+0.7
1,054,194	+		PP_0912	0.54	-0.8
1,054,195	-		PP_0912	0.54	+0.2
1,054,195	-		PP_0912	0.54	-0.1
1,054,270	+		PP_0912	0.67	+0.5
1,054,270	+		PP_0912	0.67	-0.4
1,054,271	-		PP_0912	0.67	-0.7
1,054,271	-		PP_0912	0.67	+0.1
1,054,371	+		PP_0912	0.84	+0.8
1,054,371	+		PP_0912	0.84	-0.5
1,054,371	+		PP_0912	0.84	+0.4
1,054,372	-		PP_0912	0.84	+0.9
1,054,389	+		PP_0912	0.87	+0.5
1,054,389	+		PP_0912	0.87	-0.5
1,054,389	+		PP_0912	0.87	+0.4
1,054,389	+		PP_0912	0.87	+0.0
1,054,491	-				+1.6
1,054,655	-		PP_0913	0.12	+0.1
1,054,680	+		PP_0913	0.14	+0.0
1,054,680	+		PP_0913	0.14	-2.2
1,054,680	+		PP_0913	0.14	-1.4
1,054,680	+		PP_0913	0.14	-1.2
1,054,681	-		PP_0913	0.14	+0.9
1,054,776	-		PP_0913	0.21	-0.9
1,055,107	+		PP_0913	0.46	-0.6
1,055,107	+		PP_0913	0.46	-0.5
1,055,108	-		PP_0913	0.46	+0.2
1,055,239	+		PP_0913	0.55	+0.0
1,055,399	-		PP_0913	0.67	-0.6
1,055,399	-		PP_0913	0.67	+0.3
1,055,413	+		PP_0913	0.69	+0.3
1,055,413	+		PP_0913	0.69	+0.4
1,055,414	-		PP_0913	0.69	+0.1