Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4387

Experiment: methyl 3-keto-a-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4385 and Echvi_4386 overlap by 1 nucleotidesEchvi_4386 and Echvi_4387 are separated by 236 nucleotidesEchvi_4387 and Echvi_4388 are separated by 247 nucleotides Echvi_4385: Echvi_4385 - Transposase and inactivated derivatives, at 5,243,779 to 5,244,120 _4385 Echvi_4386: Echvi_4386 - hypothetical protein, at 5,244,120 to 5,244,407 _4386 Echvi_4387: Echvi_4387 - Predicted sugar nucleotidyltransferases, at 5,244,644 to 5,245,570 _4387 Echvi_4388: Echvi_4388 - UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase, at 5,245,818 to 5,246,972 _4388 Position (kb) 5244 5245 5246Strain fitness (log2 ratio) -2 -1 0 1 2at 5244.460 kb on + strandat 5244.460 kb on + strandat 5244.467 kb on + strandat 5244.483 kb on + strandat 5244.483 kb on + strandat 5244.484 kb on - strandat 5244.642 kb on - strandat 5244.779 kb on + strand, within Echvi_4387at 5244.834 kb on + strand, within Echvi_4387at 5244.834 kb on + strand, within Echvi_4387at 5244.847 kb on + strand, within Echvi_4387at 5244.847 kb on + strand, within Echvi_4387at 5244.850 kb on + strand, within Echvi_4387at 5244.850 kb on + strand, within Echvi_4387at 5245.036 kb on + strand, within Echvi_4387at 5245.177 kb on + strand, within Echvi_4387at 5245.177 kb on + strand, within Echvi_4387at 5245.177 kb on + strand, within Echvi_4387at 5245.178 kb on - strand, within Echvi_4387at 5245.191 kb on + strand, within Echvi_4387at 5245.229 kb on + strand, within Echvi_4387at 5245.229 kb on + strand, within Echvi_4387at 5245.232 kb on + strand, within Echvi_4387at 5245.251 kb on - strand, within Echvi_4387at 5245.251 kb on - strand, within Echvi_4387at 5245.264 kb on + strand, within Echvi_4387at 5245.296 kb on + strand, within Echvi_4387at 5245.358 kb on + strand, within Echvi_4387at 5245.358 kb on + strand, within Echvi_4387at 5245.358 kb on + strand, within Echvi_4387at 5245.358 kb on + strand, within Echvi_4387at 5245.359 kb on - strand, within Echvi_4387at 5245.359 kb on - strand, within Echvi_4387at 5245.383 kb on - strand, within Echvi_4387at 5245.406 kb on + strand, within Echvi_4387at 5245.418 kb on + strand, within Echvi_4387at 5245.419 kb on - strand, within Echvi_4387at 5245.450 kb on - strand, within Echvi_4387at 5245.571 kb on + strandat 5245.573 kb on + strandat 5245.573 kb on + strandat 5245.574 kb on - strandat 5245.574 kb on - strandat 5245.612 kb on + strandat 5245.613 kb on - strandat 5245.632 kb on - strandat 5245.634 kb on + strandat 5245.652 kb on - strandat 5245.652 kb on - strandat 5245.655 kb on - strandat 5245.696 kb on + strandat 5245.696 kb on + strandat 5245.697 kb on - strandat 5245.701 kb on + strandat 5245.727 kb on + strandat 5245.747 kb on + strandat 5245.749 kb on + strandat 5245.750 kb on - strandat 5245.817 kb on - strandat 5245.856 kb on + strandat 5245.857 kb on - strandat 5245.857 kb on - strandat 5245.857 kb on - strandat 5245.859 kb on + strandat 5245.886 kb on + strandat 5245.886 kb on + strandat 5245.886 kb on + strandat 5245.887 kb on - strandat 5245.887 kb on - strandat 5245.965 kb on - strand, within Echvi_4388at 5245.990 kb on - strand, within Echvi_4388at 5246.037 kb on + strand, within Echvi_4388at 5246.040 kb on + strand, within Echvi_4388at 5246.040 kb on + strand, within Echvi_4388at 5246.041 kb on - strand, within Echvi_4388at 5246.060 kb on + strand, within Echvi_4388at 5246.124 kb on + strand, within Echvi_4388at 5246.198 kb on - strand, within Echvi_4388at 5246.217 kb on + strand, within Echvi_4388at 5246.217 kb on + strand, within Echvi_4388at 5246.218 kb on - strand, within Echvi_4388at 5246.234 kb on + strand, within Echvi_4388at 5246.235 kb on - strand, within Echvi_4388at 5246.250 kb on - strand, within Echvi_4388at 5246.260 kb on + strand, within Echvi_4388at 5246.269 kb on - strand, within Echvi_4388at 5246.272 kb on - strand, within Echvi_4388at 5246.272 kb on - strand, within Echvi_4388at 5246.281 kb on + strand, within Echvi_4388at 5246.281 kb on + strand, within Echvi_4388at 5246.281 kb on + strand, within Echvi_4388at 5246.282 kb on - strand, within Echvi_4388at 5246.282 kb on - strand, within Echvi_4388at 5246.352 kb on + strand, within Echvi_4388at 5246.372 kb on + strand, within Echvi_4388at 5246.372 kb on + strand, within Echvi_4388at 5246.372 kb on + strand, within Echvi_4388at 5246.373 kb on - strand, within Echvi_4388at 5246.374 kb on + strand, within Echvi_4388at 5246.374 kb on + strand, within Echvi_4388at 5246.376 kb on + strand, within Echvi_4388at 5246.391 kb on + strand, within Echvi_4388at 5246.391 kb on + strand, within Echvi_4388at 5246.417 kb on + strand, within Echvi_4388at 5246.432 kb on + strand, within Echvi_4388at 5246.432 kb on + strand, within Echvi_4388at 5246.433 kb on - strand, within Echvi_4388at 5246.433 kb on - strand, within Echvi_4388at 5246.433 kb on - strand, within Echvi_4388at 5246.439 kb on - strand, within Echvi_4388at 5246.468 kb on + strand, within Echvi_4388at 5246.522 kb on + strand, within Echvi_4388at 5246.522 kb on + strand, within Echvi_4388at 5246.523 kb on - strand, within Echvi_4388at 5246.523 kb on - strand, within Echvi_4388at 5246.524 kb on + strand, within Echvi_4388at 5246.524 kb on + strand, within Echvi_4388at 5246.525 kb on - strand, within Echvi_4388at 5246.525 kb on - strand, within Echvi_4388at 5246.525 kb on - strand, within Echvi_4388at 5246.541 kb on + strand, within Echvi_4388at 5246.566 kb on + strand, within Echvi_4388

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C)
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5,244,460 + -0.7
5,244,460 + +0.7
5,244,467 + +0.4
5,244,483 + -0.1
5,244,483 + -0.4
5,244,484 - +0.7
5,244,642 - -1.5
5,244,779 + Echvi_4387 0.15 -0.3
5,244,834 + Echvi_4387 0.20 -0.6
5,244,834 + Echvi_4387 0.20 +0.3
5,244,847 + Echvi_4387 0.22 +0.0
5,244,847 + Echvi_4387 0.22 -1.2
5,244,850 + Echvi_4387 0.22 +0.6
5,244,850 + Echvi_4387 0.22 -1.2
5,245,036 + Echvi_4387 0.42 -1.3
5,245,177 + Echvi_4387 0.57 -0.3
5,245,177 + Echvi_4387 0.57 -0.1
5,245,177 + Echvi_4387 0.57 -0.3
5,245,178 - Echvi_4387 0.58 +0.1
5,245,191 + Echvi_4387 0.59 -0.1
5,245,229 + Echvi_4387 0.63 -0.3
5,245,229 + Echvi_4387 0.63 -1.3
5,245,232 + Echvi_4387 0.63 +0.9
5,245,251 - Echvi_4387 0.65 -0.8
5,245,251 - Echvi_4387 0.65 -0.9
5,245,264 + Echvi_4387 0.67 -0.5
5,245,296 + Echvi_4387 0.70 +0.3
5,245,358 + Echvi_4387 0.77 -0.4
5,245,358 + Echvi_4387 0.77 +0.1
5,245,358 + Echvi_4387 0.77 +0.2
5,245,358 + Echvi_4387 0.77 -0.0
5,245,359 - Echvi_4387 0.77 -0.4
5,245,359 - Echvi_4387 0.77 +0.4
5,245,383 - Echvi_4387 0.80 -1.4
5,245,406 + Echvi_4387 0.82 +0.4
5,245,418 + Echvi_4387 0.83 -0.4
5,245,419 - Echvi_4387 0.84 -0.2
5,245,450 - Echvi_4387 0.87 -0.2
5,245,571 + +1.7
5,245,573 + +0.9
5,245,573 + -0.5
5,245,574 - -0.5
5,245,574 - +0.4
5,245,612 + +0.4
5,245,613 - -0.7
5,245,632 - -1.3
5,245,634 + -0.2
5,245,652 - +1.0
5,245,652 - -0.3
5,245,655 - +0.1
5,245,696 + -0.6
5,245,696 + -0.6
5,245,697 - -0.5
5,245,701 + +0.7
5,245,727 + +0.4
5,245,747 + +0.6
5,245,749 + -1.7
5,245,750 - -0.2
5,245,817 - -0.4
5,245,856 + -0.5
5,245,857 - -0.5
5,245,857 - +0.2
5,245,857 - -0.6
5,245,859 + +0.3
5,245,886 + +0.3
5,245,886 + -0.3
5,245,886 + +0.2
5,245,887 - +0.2
5,245,887 - +0.0
5,245,965 - Echvi_4388 0.13 -0.2
5,245,990 - Echvi_4388 0.15 -1.1
5,246,037 + Echvi_4388 0.19 -0.7
5,246,040 + Echvi_4388 0.19 +0.3
5,246,040 + Echvi_4388 0.19 -0.2
5,246,041 - Echvi_4388 0.19 -1.4
5,246,060 + Echvi_4388 0.21 -0.1
5,246,124 + Echvi_4388 0.26 -0.3
5,246,198 - Echvi_4388 0.33 -0.0
5,246,217 + Echvi_4388 0.35 -2.1
5,246,217 + Echvi_4388 0.35 +0.9
5,246,218 - Echvi_4388 0.35 +0.3
5,246,234 + Echvi_4388 0.36 +0.5
5,246,235 - Echvi_4388 0.36 -2.4
5,246,250 - Echvi_4388 0.37 -0.9
5,246,260 + Echvi_4388 0.38 +0.6
5,246,269 - Echvi_4388 0.39 +0.2
5,246,272 - Echvi_4388 0.39 +0.3
5,246,272 - Echvi_4388 0.39 +0.4
5,246,281 + Echvi_4388 0.40 -0.2
5,246,281 + Echvi_4388 0.40 +1.2
5,246,281 + Echvi_4388 0.40 -0.8
5,246,282 - Echvi_4388 0.40 -0.3
5,246,282 - Echvi_4388 0.40 -0.1
5,246,352 + Echvi_4388 0.46 +0.7
5,246,372 + Echvi_4388 0.48 -1.3
5,246,372 + Echvi_4388 0.48 -1.0
5,246,372 + Echvi_4388 0.48 -0.3
5,246,373 - Echvi_4388 0.48 -0.2
5,246,374 + Echvi_4388 0.48 +0.1
5,246,374 + Echvi_4388 0.48 +0.0
5,246,376 + Echvi_4388 0.48 -0.3
5,246,391 + Echvi_4388 0.50 -1.4
5,246,391 + Echvi_4388 0.50 +0.9
5,246,417 + Echvi_4388 0.52 -0.0
5,246,432 + Echvi_4388 0.53 +1.9
5,246,432 + Echvi_4388 0.53 -0.4
5,246,433 - Echvi_4388 0.53 +0.3
5,246,433 - Echvi_4388 0.53 -0.3
5,246,433 - Echvi_4388 0.53 -0.7
5,246,439 - Echvi_4388 0.54 -0.1
5,246,468 + Echvi_4388 0.56 +1.8
5,246,522 + Echvi_4388 0.61 -0.8
5,246,522 + Echvi_4388 0.61 -0.4
5,246,523 - Echvi_4388 0.61 -1.1
5,246,523 - Echvi_4388 0.61 -0.2
5,246,524 + Echvi_4388 0.61 -1.3
5,246,524 + Echvi_4388 0.61 +0.0
5,246,525 - Echvi_4388 0.61 +0.8
5,246,525 - Echvi_4388 0.61 +0.5
5,246,525 - Echvi_4388 0.61 -0.5
5,246,541 + Echvi_4388 0.63 -0.2
5,246,566 + Echvi_4388 0.65 -1.1

Or see this region's nucleotide sequence