Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt phr and ybgH are separated by 149 nucleotides ybgH and ybgI are separated by 270 nucleotides
b0708: phr - deoxyribodipyrimidine photolyase, FAD-binding (NCBI), at 738,730 to 740,148
phr
b0709: ybgH - predicted transporter (NCBI), at 740,298 to 741,779
ybgH
b0710: ybgI - conserved metal-binding protein (NCBI), at 742,050 to 742,793
ybgI
Position (kb) 740
741
742 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 739.322 kb on - strand, within phr at 739.415 kb on + strand, within phr at 739.415 kb on + strand, within phr at 739.475 kb on - strand, within phr at 739.648 kb on + strand, within phr at 739.648 kb on + strand, within phr at 739.648 kb on - strand, within phr at 739.648 kb on - strand, within phr at 739.720 kb on + strand, within phr at 739.765 kb on - strand, within phr at 740.129 kb on - strand at 740.287 kb on + strand at 740.366 kb on + strand at 740.534 kb on - strand, within ybgH at 740.728 kb on - strand, within ybgH at 740.728 kb on - strand, within ybgH at 740.753 kb on + strand, within ybgH at 740.756 kb on - strand, within ybgH at 740.813 kb on + strand, within ybgH at 740.813 kb on + strand, within ybgH at 740.813 kb on + strand, within ybgH at 740.821 kb on - strand, within ybgH at 740.821 kb on - strand, within ybgH at 740.924 kb on + strand, within ybgH at 740.932 kb on - strand, within ybgH at 741.037 kb on - strand, within ybgH at 741.041 kb on - strand, within ybgH at 741.041 kb on - strand, within ybgH at 741.046 kb on - strand, within ybgH at 741.046 kb on - strand, within ybgH at 741.071 kb on - strand, within ybgH at 741.071 kb on - strand, within ybgH at 741.071 kb on - strand, within ybgH at 741.082 kb on + strand, within ybgH at 741.082 kb on + strand, within ybgH at 741.090 kb on - strand, within ybgH at 741.092 kb on + strand, within ybgH at 741.092 kb on + strand, within ybgH at 741.100 kb on - strand, within ybgH at 741.100 kb on - strand, within ybgH at 741.102 kb on + strand, within ybgH at 741.104 kb on - strand, within ybgH at 741.225 kb on - strand, within ybgH at 741.225 kb on - strand, within ybgH at 741.275 kb on + strand, within ybgH at 741.275 kb on + strand, within ybgH at 741.280 kb on - strand, within ybgH at 741.334 kb on + strand, within ybgH at 741.344 kb on + strand, within ybgH at 741.344 kb on + strand, within ybgH at 741.408 kb on - strand, within ybgH at 741.442 kb on - strand, within ybgH at 741.494 kb on - strand, within ybgH at 741.528 kb on - strand, within ybgH at 741.616 kb on - strand, within ybgH at 741.680 kb on + strand at 741.744 kb on - strand at 741.758 kb on + strand at 741.766 kb on - strand at 741.831 kb on - strand at 741.987 kb on + strand at 742.010 kb on + strand at 742.010 kb on + strand at 742.019 kb on + strand at 742.126 kb on + strand, within ybgI at 742.191 kb on - strand, within ybgI at 742.191 kb on - strand, within ybgI at 742.292 kb on - strand, within ybgI at 742.357 kb on + strand, within ybgI at 742.357 kb on + strand, within ybgI at 742.438 kb on + strand, within ybgI at 742.541 kb on + strand, within ybgI at 742.541 kb on + strand, within ybgI at 742.615 kb on + strand, within ybgI at 742.699 kb on - strand, within ybgI at 742.753 kb on + strand at 742.761 kb on - strand at 742.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 739,322 - phr b0708 0.42 -1.1 739,415 + phr b0708 0.48 +0.4 739,415 + phr b0708 0.48 +0.9 739,475 - phr b0708 0.53 +0.9 739,648 + phr b0708 0.65 +0.8 739,648 + phr b0708 0.65 +0.2 739,648 - phr b0708 0.65 -2.8 739,648 - phr b0708 0.65 +2.4 739,720 + phr b0708 0.70 -0.9 739,765 - phr b0708 0.73 -0.2 740,129 - +1.1 740,287 + -0.4 740,366 + +1.5 740,534 - ybgH b0709 0.16 +0.1 740,728 - ybgH b0709 0.29 +1.2 740,728 - ybgH b0709 0.29 -0.2 740,753 + ybgH b0709 0.31 +1.2 740,756 - ybgH b0709 0.31 +0.3 740,813 + ybgH b0709 0.35 +1.2 740,813 + ybgH b0709 0.35 +0.8 740,813 + ybgH b0709 0.35 +0.4 740,821 - ybgH b0709 0.35 +1.3 740,821 - ybgH b0709 0.35 -2.0 740,924 + ybgH b0709 0.42 +0.7 740,932 - ybgH b0709 0.43 +0.7 741,037 - ybgH b0709 0.50 +1.8 741,041 - ybgH b0709 0.50 +0.2 741,041 - ybgH b0709 0.50 -1.1 741,046 - ybgH b0709 0.50 +2.2 741,046 - ybgH b0709 0.50 +1.1 741,071 - ybgH b0709 0.52 +0.1 741,071 - ybgH b0709 0.52 +1.1 741,071 - ybgH b0709 0.52 -0.0 741,082 + ybgH b0709 0.53 +0.5 741,082 + ybgH b0709 0.53 -0.5 741,090 - ybgH b0709 0.53 -0.3 741,092 + ybgH b0709 0.54 -0.2 741,092 + ybgH b0709 0.54 -0.8 741,100 - ybgH b0709 0.54 +1.1 741,100 - ybgH b0709 0.54 -0.2 741,102 + ybgH b0709 0.54 +1.0 741,104 - ybgH b0709 0.54 +0.0 741,225 - ybgH b0709 0.63 +0.2 741,225 - ybgH b0709 0.63 +1.5 741,275 + ybgH b0709 0.66 +0.5 741,275 + ybgH b0709 0.66 +0.6 741,280 - ybgH b0709 0.66 +0.8 741,334 + ybgH b0709 0.70 +0.9 741,344 + ybgH b0709 0.71 +2.5 741,344 + ybgH b0709 0.71 -0.3 741,408 - ybgH b0709 0.75 +0.4 741,442 - ybgH b0709 0.77 -0.8 741,494 - ybgH b0709 0.81 -0.1 741,528 - ybgH b0709 0.83 +0.1 741,616 - ybgH b0709 0.89 -0.1 741,680 + -0.1 741,744 - -0.2 741,758 + +2.3 741,766 - -0.9 741,831 - -1.4 741,987 + +1.8 742,010 + -0.1 742,010 + +3.9 742,019 + +3.9 742,126 + ybgI b0710 0.10 -1.5 742,191 - ybgI b0710 0.19 +0.1 742,191 - ybgI b0710 0.19 +0.6 742,292 - ybgI b0710 0.33 -2.8 742,357 + ybgI b0710 0.41 -0.1 742,357 + ybgI b0710 0.41 -0.3 742,438 + ybgI b0710 0.52 +0.2 742,541 + ybgI b0710 0.66 -0.5 742,541 + ybgI b0710 0.66 -3.3 742,615 + ybgI b0710 0.76 -2.2 742,699 - ybgI b0710 0.87 -1.0 742,753 + -0.9 742,761 - -0.5 742,761 - +0.0
Or see this region's nucleotide sequence