Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1843

Experiment: Methyl beta-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1842 and Echvi_1843 are separated by 43 nucleotidesEchvi_1843 and Echvi_1844 overlap by 147 nucleotides Echvi_1842: Echvi_1842 - 3-ketohexose dehydratase (from data), at 2,157,973 to 2,159,025 _1842 Echvi_1843: Echvi_1843 - hypothetical protein, at 2,159,069 to 2,159,359 _1843 Echvi_1844: Echvi_1844 - 3-ketohexose reductase (NADH) (from data), at 2,159,213 to 2,160,382 _1844 Position (kb) 2159 2160Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2158.155 kb on + strand, within Echvi_1842at 2158.172 kb on - strand, within Echvi_1842at 2158.176 kb on + strand, within Echvi_1842at 2158.182 kb on + strand, within Echvi_1842at 2158.204 kb on + strand, within Echvi_1842at 2158.253 kb on + strand, within Echvi_1842at 2158.253 kb on + strand, within Echvi_1842at 2158.253 kb on + strand, within Echvi_1842at 2158.253 kb on + strand, within Echvi_1842at 2158.254 kb on - strand, within Echvi_1842at 2158.254 kb on - strand, within Echvi_1842at 2158.254 kb on - strand, within Echvi_1842at 2158.344 kb on - strand, within Echvi_1842at 2158.361 kb on - strand, within Echvi_1842at 2158.379 kb on + strand, within Echvi_1842at 2158.477 kb on + strand, within Echvi_1842at 2158.477 kb on + strand, within Echvi_1842at 2158.477 kb on + strand, within Echvi_1842at 2158.477 kb on + strand, within Echvi_1842at 2158.478 kb on - strand, within Echvi_1842at 2158.483 kb on + strand, within Echvi_1842at 2158.661 kb on + strand, within Echvi_1842at 2158.661 kb on + strand, within Echvi_1842at 2158.661 kb on + strand, within Echvi_1842at 2158.661 kb on + strand, within Echvi_1842at 2158.661 kb on + strand, within Echvi_1842at 2158.661 kb on + strand, within Echvi_1842at 2158.662 kb on - strand, within Echvi_1842at 2158.662 kb on - strand, within Echvi_1842at 2158.662 kb on - strand, within Echvi_1842at 2158.748 kb on + strand, within Echvi_1842at 2158.748 kb on + strand, within Echvi_1842at 2158.780 kb on + strand, within Echvi_1842at 2158.781 kb on - strand, within Echvi_1842at 2158.919 kb on + strand, within Echvi_1842at 2158.954 kb on - strandat 2159.189 kb on + strand, within Echvi_1843at 2159.288 kb on + strandat 2159.289 kb on - strandat 2159.461 kb on - strand, within Echvi_1844at 2159.743 kb on - strand, within Echvi_1844at 2159.783 kb on - strandat 2159.886 kb on + strand, within Echvi_1844at 2159.887 kb on - strand, within Echvi_1844at 2159.924 kb on - strand, within Echvi_1844at 2159.942 kb on + strand, within Echvi_1844at 2159.972 kb on - strand, within Echvi_1844at 2159.972 kb on - strand, within Echvi_1844at 2159.972 kb on - strand, within Echvi_1844at 2160.195 kb on + strand, within Echvi_1844at 2160.195 kb on + strand, within Echvi_1844at 2160.196 kb on - strand, within Echvi_1844

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C)
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2,158,155 + Echvi_1842 0.17 -1.8
2,158,172 - Echvi_1842 0.19 -0.3
2,158,176 + Echvi_1842 0.19 -3.6
2,158,182 + Echvi_1842 0.20 -2.6
2,158,204 + Echvi_1842 0.22 -1.6
2,158,253 + Echvi_1842 0.27 -3.1
2,158,253 + Echvi_1842 0.27 -1.7
2,158,253 + Echvi_1842 0.27 -0.9
2,158,253 + Echvi_1842 0.27 +0.5
2,158,254 - Echvi_1842 0.27 -0.4
2,158,254 - Echvi_1842 0.27 -0.8
2,158,254 - Echvi_1842 0.27 -1.1
2,158,344 - Echvi_1842 0.35 -1.5
2,158,361 - Echvi_1842 0.37 +0.3
2,158,379 + Echvi_1842 0.39 -1.3
2,158,477 + Echvi_1842 0.48 -3.4
2,158,477 + Echvi_1842 0.48 -1.1
2,158,477 + Echvi_1842 0.48 -2.0
2,158,477 + Echvi_1842 0.48 -0.9
2,158,478 - Echvi_1842 0.48 -1.4
2,158,483 + Echvi_1842 0.48 -1.2
2,158,661 + Echvi_1842 0.65 -1.7
2,158,661 + Echvi_1842 0.65 +0.6
2,158,661 + Echvi_1842 0.65 -3.3
2,158,661 + Echvi_1842 0.65 -1.3
2,158,661 + Echvi_1842 0.65 -1.5
2,158,661 + Echvi_1842 0.65 -3.2
2,158,662 - Echvi_1842 0.65 -0.4
2,158,662 - Echvi_1842 0.65 -1.9
2,158,662 - Echvi_1842 0.65 -1.7
2,158,748 + Echvi_1842 0.74 -1.8
2,158,748 + Echvi_1842 0.74 -1.0
2,158,780 + Echvi_1842 0.77 -0.6
2,158,781 - Echvi_1842 0.77 -1.9
2,158,919 + Echvi_1842 0.90 -2.4
2,158,954 - -0.9
2,159,189 + Echvi_1843 0.41 -0.2
2,159,288 + -2.0
2,159,289 - -0.1
2,159,461 - Echvi_1844 0.21 +1.6
2,159,743 - Echvi_1844 0.45 -0.7
2,159,783 - +1.9
2,159,886 + Echvi_1844 0.58 -1.2
2,159,887 - Echvi_1844 0.58 +0.1
2,159,924 - Echvi_1844 0.61 -1.5
2,159,942 + Echvi_1844 0.62 +0.5
2,159,972 - Echvi_1844 0.65 -0.7
2,159,972 - Echvi_1844 0.65 -0.8
2,159,972 - Echvi_1844 0.65 +0.1
2,160,195 + Echvi_1844 0.84 -0.0
2,160,195 + Echvi_1844 0.84 +0.9
2,160,196 - Echvi_1844 0.84 +0.7

Or see this region's nucleotide sequence