Experiment: Methyl beta-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0565 and Echvi_0566 are separated by 590 nucleotides Echvi_0566 and Echvi_0567 are separated by 20 nucleotides
Echvi_0565: Echvi_0565 - Predicted dehydrogenases and related proteins, at 639,243 to 640,709
_0565
Echvi_0566: Echvi_0566 - TonB-dependent receptor for glucose (SusC-like) <small>(from data)</small>, at 641,300 to 644,539
_0566
Echvi_0567: Echvi_0567 - outer membrane binding protein for glucose (SusD-like) <small>(from data)</small>, at 644,560 to 646,344
_0567
Position (kb) 641
642
643
644
645 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 640.300 kb on + strand, within Echvi_0565 at 640.300 kb on + strand, within Echvi_0565 at 640.300 kb on + strand, within Echvi_0565 at 640.301 kb on - strand, within Echvi_0565 at 640.301 kb on - strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.347 kb on + strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.420 kb on + strand, within Echvi_0565 at 640.420 kb on + strand, within Echvi_0565 at 640.421 kb on - strand, within Echvi_0565 at 640.477 kb on - strand, within Echvi_0565 at 640.714 kb on + strand at 640.716 kb on + strand at 640.717 kb on - strand at 640.910 kb on + strand at 640.928 kb on + strand at 640.932 kb on - strand at 640.951 kb on + strand at 641.046 kb on + strand at 641.054 kb on + strand at 641.055 kb on - strand at 641.090 kb on - strand at 641.120 kb on + strand at 641.120 kb on + strand at 641.120 kb on + strand at 641.120 kb on + strand at 641.148 kb on - strand at 641.172 kb on - strand at 641.177 kb on + strand at 641.198 kb on + strand at 641.198 kb on + strand at 641.204 kb on - strand at 641.204 kb on - strand at 641.204 kb on - strand at 641.204 kb on - strand at 641.225 kb on + strand at 641.245 kb on + strand at 641.245 kb on + strand at 641.277 kb on + strand at 641.278 kb on - strand at 641.284 kb on - strand at 641.287 kb on + strand at 641.293 kb on + strand at 641.350 kb on + strand at 641.398 kb on - strand at 641.455 kb on + strand at 641.455 kb on + strand at 641.455 kb on + strand at 641.456 kb on - strand at 641.456 kb on - strand at 641.508 kb on - strand at 641.520 kb on + strand at 641.521 kb on - strand at 641.521 kb on - strand at 641.533 kb on + strand at 641.558 kb on + strand at 641.599 kb on - strand at 641.830 kb on - strand, within Echvi_0566 at 641.849 kb on - strand, within Echvi_0566 at 641.849 kb on - strand, within Echvi_0566 at 641.914 kb on - strand, within Echvi_0566 at 641.914 kb on - strand, within Echvi_0566 at 641.954 kb on - strand, within Echvi_0566 at 642.029 kb on + strand, within Echvi_0566 at 642.029 kb on + strand, within Echvi_0566 at 642.030 kb on - strand, within Echvi_0566 at 642.030 kb on - strand, within Echvi_0566 at 642.030 kb on - strand, within Echvi_0566 at 642.038 kb on + strand, within Echvi_0566 at 642.038 kb on + strand, within Echvi_0566 at 642.039 kb on - strand, within Echvi_0566 at 642.039 kb on - strand, within Echvi_0566 at 642.197 kb on + strand, within Echvi_0566 at 642.197 kb on + strand, within Echvi_0566 at 642.197 kb on + strand, within Echvi_0566 at 642.197 kb on + strand, within Echvi_0566 at 642.198 kb on - strand, within Echvi_0566 at 642.199 kb on + strand, within Echvi_0566 at 642.210 kb on + strand, within Echvi_0566 at 642.239 kb on + strand, within Echvi_0566 at 642.240 kb on - strand, within Echvi_0566 at 642.240 kb on - strand, within Echvi_0566 at 642.241 kb on + strand, within Echvi_0566 at 642.242 kb on - strand, within Echvi_0566 at 642.254 kb on + strand, within Echvi_0566 at 642.255 kb on - strand, within Echvi_0566 at 642.255 kb on - strand, within Echvi_0566 at 642.401 kb on + strand, within Echvi_0566 at 642.448 kb on + strand, within Echvi_0566 at 642.449 kb on - strand, within Echvi_0566 at 642.449 kb on - strand, within Echvi_0566 at 642.449 kb on - strand, within Echvi_0566 at 642.488 kb on + strand, within Echvi_0566 at 642.488 kb on + strand, within Echvi_0566 at 642.489 kb on - strand, within Echvi_0566 at 642.490 kb on + strand, within Echvi_0566 at 642.511 kb on + strand, within Echvi_0566 at 642.530 kb on + strand, within Echvi_0566 at 642.530 kb on + strand, within Echvi_0566 at 642.673 kb on + strand, within Echvi_0566 at 642.745 kb on - strand, within Echvi_0566 at 642.803 kb on + strand, within Echvi_0566 at 642.804 kb on - strand, within Echvi_0566 at 642.814 kb on + strand, within Echvi_0566 at 642.814 kb on + strand, within Echvi_0566 at 642.815 kb on - strand, within Echvi_0566 at 642.815 kb on - strand, within Echvi_0566 at 642.875 kb on + strand, within Echvi_0566 at 642.875 kb on + strand, within Echvi_0566 at 642.875 kb on + strand, within Echvi_0566 at 642.901 kb on + strand, within Echvi_0566 at 642.901 kb on + strand, within Echvi_0566 at 642.906 kb on - strand, within Echvi_0566 at 642.925 kb on + strand, within Echvi_0566 at 642.930 kb on - strand, within Echvi_0566 at 643.020 kb on - strand, within Echvi_0566 at 643.102 kb on + strand, within Echvi_0566 at 643.102 kb on + strand, within Echvi_0566 at 643.139 kb on + strand, within Echvi_0566 at 643.145 kb on + strand, within Echvi_0566 at 643.145 kb on + strand, within Echvi_0566 at 643.145 kb on + strand, within Echvi_0566 at 643.145 kb on + strand, within Echvi_0566 at 643.146 kb on - strand, within Echvi_0566 at 643.146 kb on - strand, within Echvi_0566 at 643.146 kb on - strand, within Echvi_0566 at 643.153 kb on + strand, within Echvi_0566 at 643.153 kb on + strand, within Echvi_0566 at 643.157 kb on + strand, within Echvi_0566 at 643.157 kb on + strand, within Echvi_0566 at 643.158 kb on - strand, within Echvi_0566 at 643.158 kb on - strand, within Echvi_0566 at 643.214 kb on + strand, within Echvi_0566 at 643.267 kb on + strand, within Echvi_0566 at 643.302 kb on + strand, within Echvi_0566 at 643.359 kb on - strand, within Echvi_0566 at 643.364 kb on - strand, within Echvi_0566 at 643.364 kb on - strand, within Echvi_0566 at 643.367 kb on + strand, within Echvi_0566 at 643.367 kb on + strand, within Echvi_0566 at 643.368 kb on - strand, within Echvi_0566 at 643.368 kb on - strand, within Echvi_0566 at 643.391 kb on + strand, within Echvi_0566 at 643.392 kb on - strand, within Echvi_0566 at 643.399 kb on + strand, within Echvi_0566 at 643.423 kb on - strand, within Echvi_0566 at 643.484 kb on - strand, within Echvi_0566 at 643.544 kb on + strand, within Echvi_0566 at 643.544 kb on + strand, within Echvi_0566 at 643.544 kb on + strand, within Echvi_0566 at 643.547 kb on + strand, within Echvi_0566 at 643.548 kb on - strand, within Echvi_0566 at 643.548 kb on - strand, within Echvi_0566 at 643.548 kb on - strand, within Echvi_0566 at 643.548 kb on - strand, within Echvi_0566 at 643.549 kb on + strand, within Echvi_0566 at 643.552 kb on + strand, within Echvi_0566 at 643.574 kb on + strand, within Echvi_0566 at 643.619 kb on + strand, within Echvi_0566 at 643.619 kb on + strand, within Echvi_0566 at 643.619 kb on + strand, within Echvi_0566 at 643.619 kb on + strand, within Echvi_0566 at 643.619 kb on + strand, within Echvi_0566 at 643.620 kb on - strand, within Echvi_0566 at 643.673 kb on + strand, within Echvi_0566 at 643.673 kb on + strand, within Echvi_0566 at 643.674 kb on - strand, within Echvi_0566 at 643.674 kb on - strand, within Echvi_0566 at 643.674 kb on - strand, within Echvi_0566 at 643.679 kb on - strand, within Echvi_0566 at 643.702 kb on + strand, within Echvi_0566 at 643.721 kb on - strand, within Echvi_0566 at 643.723 kb on + strand, within Echvi_0566 at 643.727 kb on + strand, within Echvi_0566 at 643.728 kb on - strand, within Echvi_0566 at 643.728 kb on - strand, within Echvi_0566 at 643.728 kb on - strand, within Echvi_0566 at 643.728 kb on - strand, within Echvi_0566 at 643.969 kb on + strand, within Echvi_0566 at 643.970 kb on - strand, within Echvi_0566 at 643.973 kb on + strand, within Echvi_0566 at 644.106 kb on - strand, within Echvi_0566 at 644.159 kb on + strand, within Echvi_0566 at 644.239 kb on + strand at 644.239 kb on + strand at 644.239 kb on + strand at 644.240 kb on - strand at 644.240 kb on - strand at 644.278 kb on - strand at 644.288 kb on + strand at 644.468 kb on - strand at 644.513 kb on - strand at 644.537 kb on + strand at 644.559 kb on + strand at 644.560 kb on - strand at 644.574 kb on + strand at 644.586 kb on + strand at 644.600 kb on + strand at 644.806 kb on + strand, within Echvi_0567 at 644.807 kb on - strand, within Echvi_0567 at 644.816 kb on + strand, within Echvi_0567 at 644.817 kb on - strand, within Echvi_0567 at 644.817 kb on - strand, within Echvi_0567 at 644.887 kb on + strand, within Echvi_0567 at 645.236 kb on - strand, within Echvi_0567 at 645.250 kb on + strand, within Echvi_0567 at 645.251 kb on - strand, within Echvi_0567 at 645.251 kb on - strand, within Echvi_0567 at 645.283 kb on - strand, within Echvi_0567 at 645.348 kb on + strand, within Echvi_0567 at 645.398 kb on + strand, within Echvi_0567
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C) remove 640,300 + Echvi_0565 0.72 +0.5 640,300 + Echvi_0565 0.72 +0.6 640,300 + Echvi_0565 0.72 +0.1 640,301 - Echvi_0565 0.72 -0.8 640,301 - Echvi_0565 0.72 +0.0 640,302 + Echvi_0565 0.72 +1.1 640,302 + Echvi_0565 0.72 +0.0 640,302 + Echvi_0565 0.72 -0.1 640,302 + Echvi_0565 0.72 -0.1 640,302 + Echvi_0565 0.72 -0.2 640,302 + Echvi_0565 0.72 -0.2 640,303 - Echvi_0565 0.72 +0.2 640,303 - Echvi_0565 0.72 +0.8 640,303 - Echvi_0565 0.72 -1.3 640,303 - Echvi_0565 0.72 -0.4 640,303 - Echvi_0565 0.72 +0.9 640,347 + Echvi_0565 0.75 +0.5 640,348 - Echvi_0565 0.75 -1.5 640,348 - Echvi_0565 0.75 +0.2 640,348 - Echvi_0565 0.75 +0.8 640,348 - Echvi_0565 0.75 -1.7 640,348 - Echvi_0565 0.75 +0.3 640,420 + Echvi_0565 0.80 +0.0 640,420 + Echvi_0565 0.80 -0.4 640,421 - Echvi_0565 0.80 +1.1 640,477 - Echvi_0565 0.84 -0.3 640,714 + -0.4 640,716 + -0.2 640,717 - -0.5 640,910 + +0.1 640,928 + +0.1 640,932 - -1.7 640,951 + +0.1 641,046 + +0.2 641,054 + -0.6 641,055 - -3.3 641,090 - -0.9 641,120 + -0.5 641,120 + -1.2 641,120 + +0.2 641,120 + +1.6 641,148 - +0.1 641,172 - -2.0 641,177 + -0.5 641,198 + -0.7 641,198 + +0.6 641,204 - -0.3 641,204 - -0.4 641,204 - -1.3 641,204 - -0.4 641,225 + -0.7 641,245 + -0.3 641,245 + -0.6 641,277 + -0.6 641,278 - -2.8 641,284 - -1.7 641,287 + -0.0 641,293 + -0.3 641,350 + +0.3 641,398 - +0.1 641,455 + -0.2 641,455 + +0.3 641,455 + -0.6 641,456 - +0.3 641,456 - -1.9 641,508 - -1.0 641,520 + +0.6 641,521 - -0.3 641,521 - +0.1 641,533 + -0.3 641,558 + -0.4 641,599 - +0.5 641,830 - Echvi_0566 0.16 -2.8 641,849 - Echvi_0566 0.17 +0.6 641,849 - Echvi_0566 0.17 -0.7 641,914 - Echvi_0566 0.19 +0.6 641,914 - Echvi_0566 0.19 -0.5 641,954 - Echvi_0566 0.20 -1.3 642,029 + Echvi_0566 0.23 +0.2 642,029 + Echvi_0566 0.23 -1.1 642,030 - Echvi_0566 0.23 -1.0 642,030 - Echvi_0566 0.23 +0.0 642,030 - Echvi_0566 0.23 -0.7 642,038 + Echvi_0566 0.23 +0.5 642,038 + Echvi_0566 0.23 -0.8 642,039 - Echvi_0566 0.23 -0.1 642,039 - Echvi_0566 0.23 -1.2 642,197 + Echvi_0566 0.28 -1.3 642,197 + Echvi_0566 0.28 -0.5 642,197 + Echvi_0566 0.28 -1.9 642,197 + Echvi_0566 0.28 -1.0 642,198 - Echvi_0566 0.28 -0.6 642,199 + Echvi_0566 0.28 -1.9 642,210 + Echvi_0566 0.28 -0.7 642,239 + Echvi_0566 0.29 -0.2 642,240 - Echvi_0566 0.29 -1.2 642,240 - Echvi_0566 0.29 +0.8 642,241 + Echvi_0566 0.29 +0.2 642,242 - Echvi_0566 0.29 +0.6 642,254 + Echvi_0566 0.29 -3.4 642,255 - Echvi_0566 0.29 -1.4 642,255 - Echvi_0566 0.29 -0.1 642,401 + Echvi_0566 0.34 -1.0 642,448 + Echvi_0566 0.35 -1.4 642,449 - Echvi_0566 0.35 -0.9 642,449 - Echvi_0566 0.35 -0.1 642,449 - Echvi_0566 0.35 -2.3 642,488 + Echvi_0566 0.37 -2.3 642,488 + Echvi_0566 0.37 -1.1 642,489 - Echvi_0566 0.37 -1.7 642,490 + Echvi_0566 0.37 -0.3 642,511 + Echvi_0566 0.37 +0.6 642,530 + Echvi_0566 0.38 +0.1 642,530 + Echvi_0566 0.38 +0.4 642,673 + Echvi_0566 0.42 -2.3 642,745 - Echvi_0566 0.45 -2.2 642,803 + Echvi_0566 0.46 -0.3 642,804 - Echvi_0566 0.46 -0.1 642,814 + Echvi_0566 0.47 -1.0 642,814 + Echvi_0566 0.47 -0.3 642,815 - Echvi_0566 0.47 -1.3 642,815 - Echvi_0566 0.47 +1.2 642,875 + Echvi_0566 0.49 -0.3 642,875 + Echvi_0566 0.49 -1.7 642,875 + Echvi_0566 0.49 -2.2 642,901 + Echvi_0566 0.49 -0.9 642,901 + Echvi_0566 0.49 -1.3 642,906 - Echvi_0566 0.50 -1.9 642,925 + Echvi_0566 0.50 -0.3 642,930 - Echvi_0566 0.50 -1.0 643,020 - Echvi_0566 0.53 -1.9 643,102 + Echvi_0566 0.56 -1.0 643,102 + Echvi_0566 0.56 -0.7 643,139 + Echvi_0566 0.57 +0.2 643,145 + Echvi_0566 0.57 -1.7 643,145 + Echvi_0566 0.57 -1.5 643,145 + Echvi_0566 0.57 -0.1 643,145 + Echvi_0566 0.57 -0.9 643,146 - Echvi_0566 0.57 +0.0 643,146 - Echvi_0566 0.57 -1.2 643,146 - Echvi_0566 0.57 -1.1 643,153 + Echvi_0566 0.57 +1.4 643,153 + Echvi_0566 0.57 -0.1 643,157 + Echvi_0566 0.57 +0.5 643,157 + Echvi_0566 0.57 -1.3 643,158 - Echvi_0566 0.57 -0.1 643,158 - Echvi_0566 0.57 +0.5 643,214 + Echvi_0566 0.59 +0.1 643,267 + Echvi_0566 0.61 -0.4 643,302 + Echvi_0566 0.62 +0.9 643,359 - Echvi_0566 0.64 +0.2 643,364 - Echvi_0566 0.64 +0.1 643,364 - Echvi_0566 0.64 -0.1 643,367 + Echvi_0566 0.64 -1.3 643,367 + Echvi_0566 0.64 -0.8 643,368 - Echvi_0566 0.64 +0.2 643,368 - Echvi_0566 0.64 -1.3 643,391 + Echvi_0566 0.65 -1.5 643,392 - Echvi_0566 0.65 -2.5 643,399 + Echvi_0566 0.65 -1.8 643,423 - Echvi_0566 0.66 -0.8 643,484 - Echvi_0566 0.67 -0.8 643,544 + Echvi_0566 0.69 -0.8 643,544 + Echvi_0566 0.69 -0.3 643,544 + Echvi_0566 0.69 +0.7 643,547 + Echvi_0566 0.69 -0.9 643,548 - Echvi_0566 0.69 +0.1 643,548 - Echvi_0566 0.69 -0.3 643,548 - Echvi_0566 0.69 -1.7 643,548 - Echvi_0566 0.69 -1.3 643,549 + Echvi_0566 0.69 -0.4 643,552 + Echvi_0566 0.70 +0.9 643,574 + Echvi_0566 0.70 -0.2 643,619 + Echvi_0566 0.72 -0.4 643,619 + Echvi_0566 0.72 -0.5 643,619 + Echvi_0566 0.72 +0.2 643,619 + Echvi_0566 0.72 -0.0 643,619 + Echvi_0566 0.72 -0.8 643,620 - Echvi_0566 0.72 -1.3 643,673 + Echvi_0566 0.73 -0.1 643,673 + Echvi_0566 0.73 +0.5 643,674 - Echvi_0566 0.73 -2.5 643,674 - Echvi_0566 0.73 +0.7 643,674 - Echvi_0566 0.73 -1.5 643,679 - Echvi_0566 0.73 +0.1 643,702 + Echvi_0566 0.74 -1.1 643,721 - Echvi_0566 0.75 -0.9 643,723 + Echvi_0566 0.75 +0.3 643,727 + Echvi_0566 0.75 +0.1 643,728 - Echvi_0566 0.75 -1.2 643,728 - Echvi_0566 0.75 +0.2 643,728 - Echvi_0566 0.75 -1.1 643,728 - Echvi_0566 0.75 -1.4 643,969 + Echvi_0566 0.82 -0.6 643,970 - Echvi_0566 0.82 -0.8 643,973 + Echvi_0566 0.82 -0.6 644,106 - Echvi_0566 0.87 +0.8 644,159 + Echvi_0566 0.88 -0.4 644,239 + -1.0 644,239 + -0.2 644,239 + -0.8 644,240 - -0.9 644,240 - -1.4 644,278 - +0.7 644,288 + -0.8 644,468 - -0.8 644,513 - -0.2 644,537 + +0.5 644,559 + +0.3 644,560 - -0.4 644,574 + -0.8 644,586 + +0.5 644,600 + -1.6 644,806 + Echvi_0567 0.14 -0.5 644,807 - Echvi_0567 0.14 -0.6 644,816 + Echvi_0567 0.14 -0.4 644,817 - Echvi_0567 0.14 -0.8 644,817 - Echvi_0567 0.14 -0.8 644,887 + Echvi_0567 0.18 -0.4 645,236 - Echvi_0567 0.38 +0.3 645,250 + Echvi_0567 0.39 +0.2 645,251 - Echvi_0567 0.39 -1.2 645,251 - Echvi_0567 0.39 -0.3 645,283 - Echvi_0567 0.41 -0.8 645,348 + Echvi_0567 0.44 +0.4 645,398 + Echvi_0567 0.47 -0.9
Or see this region's nucleotide sequence