Strain Fitness in Pseudomonas putida KT2440 around PP_1937

Experiment: Sorghum Hydrolysate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sorghum Hydrolysate (C)
2,188,158	-		PP_5491	0.60	-0.1
2,188,220	+		PP_5491	0.67	+1.6
2,188,402	+		PP_5491	0.86	+0.8
2,188,522	-				-0.2
2,188,631	+		PP_5492	0.19	-0.7
2,188,642	+		PP_5492	0.21	+0.2
2,188,642	+		PP_5492	0.21	+0.2
2,188,697	+		PP_5492	0.31	+1.1
2,188,990	+		PP_5492	0.84	+0.5
2,188,990	+		PP_5492	0.84	+0.4
2,188,990	+		PP_5492	0.84	+0.1
2,188,991	-		PP_5492	0.84	+0.2
2,188,991	-		PP_5492	0.84	+1.2
2,188,991	-		PP_5492	0.84	+1.3
2,189,041	+				-0.5
2,189,057	-				-0.0
2,189,097	+				-0.4
2,189,102	+				-1.3
2,189,103	-				+1.0
2,189,133	+				+0.4
2,189,259	+				-0.5
2,189,259	+				+0.6
2,189,291	-				-0.0
2,189,310	+				+0.0
2,189,311	-				-0.2
2,189,311	-				+1.0
2,189,440	+				-0.3
2,189,440	+				-0.2
2,189,441	-				+0.6
2,189,484	-		PP_1937	0.11	-0.0
2,189,484	-		PP_1937	0.11	+0.4
2,189,486	+		PP_1937	0.11	+0.1
2,189,486	+		PP_1937	0.11	-0.4
2,189,486	+		PP_1937	0.11	+0.2
2,189,486	+		PP_1937	0.11	+0.9
2,189,486	+		PP_1937	0.11	+0.1
2,189,487	-		PP_1937	0.11	+1.0
2,189,487	-		PP_1937	0.11	-0.3
2,189,542	+		PP_1937	0.13	+0.2
2,189,542	+		PP_1937	0.13	+0.0
2,189,542	+		PP_1937	0.13	+0.5
2,189,542	+		PP_1937	0.13	+0.5
2,189,552	+		PP_1937	0.13	-0.2
2,189,552	+		PP_1937	0.13	+0.1
2,189,552	+		PP_1937	0.13	+0.2
2,189,553	-		PP_1937	0.13	+1.8
2,189,553	-		PP_1937	0.13	+0.5
2,189,553	-		PP_1937	0.13	+0.7
2,189,605	+		PP_1937	0.14	+0.2
2,189,605	+		PP_1937	0.14	+0.1
2,189,605	+		PP_1937	0.14	+0.7
2,189,621	+		PP_1937	0.15	+0.7
2,189,621	+		PP_1937	0.15	+0.8
2,189,621	+		PP_1937	0.15	-0.3
2,189,621	+		PP_1937	0.15	-0.5
2,189,621	+		PP_1937	0.15	-0.2
2,189,621	+		PP_1937	0.15	-0.1
2,189,622	-		PP_1937	0.15	+0.4
2,189,622	-		PP_1937	0.15	-0.1
2,189,622	-		PP_1937	0.15	-0.1
2,189,622	-		PP_1937	0.15	-0.0
2,189,625	+		PP_1937	0.15	-0.0
2,189,625	+		PP_1937	0.15	+0.5
2,189,626	-		PP_1937	0.15	+0.9
2,189,626	-		PP_1937	0.15	-0.0
2,189,693	+		PP_1937	0.17	+0.3
2,189,750	+		PP_1937	0.19	+1.5
2,189,837	-		PP_1937	0.22	+1.4
2,189,897	+		PP_1937	0.23	+0.2
2,189,897	+		PP_1937	0.23	-0.1
2,189,911	+		PP_1937	0.24	+0.0
2,189,999	+		PP_1937	0.27	-0.5
2,189,999	+		PP_1937	0.27	+0.3
2,189,999	+		PP_1937	0.27	-0.1
2,189,999	+		PP_1937	0.27	+0.6
2,190,000	-		PP_1937	0.27	+1.2
2,190,000	-		PP_1937	0.27	+0.3
2,190,000	-		PP_1937	0.27	+0.2
2,190,000	-		PP_1937	0.27	-0.6
2,190,000	-		PP_1937	0.27	+0.3
2,190,009	+		PP_1937	0.27	+0.3
2,190,171	-		PP_1937	0.32	-0.4
2,190,343	-		PP_1937	0.37	-0.4
2,190,374	+		PP_1937	0.38	+0.3
2,190,374	+		PP_1937	0.38	+0.6
2,190,375	-		PP_1937	0.38	+0.1
2,190,375	-		PP_1937	0.38	-0.8
2,190,441	-		PP_1937	0.40	-0.6
2,190,441	-		PP_1937	0.40	+1.2
2,190,515	+		PP_1937	0.42	+0.5
2,190,552	-		PP_1937	0.44	-0.8
2,190,583	+		PP_1937	0.44	-0.6
2,190,727	+		PP_1937	0.49	+1.4
2,190,727	+		PP_1937	0.49	-0.3
2,190,728	-		PP_1937	0.49	+1.1
2,190,731	+		PP_1937	0.49	-0.7
2,190,731	+		PP_1937	0.49	-1.2
2,190,731	+		PP_1937	0.49	+0.2
2,190,731	+		PP_1937	0.49	+1.2
2,190,761	+		PP_1937	0.50	+0.3
2,190,769	+		PP_1937	0.50	+1.2
2,190,770	-		PP_1937	0.50	-0.1
2,190,770	-		PP_1937	0.50	+0.9
2,190,770	-		PP_1937	0.50	+1.1
2,190,811	+		PP_1937	0.51	+0.1
2,190,812	-		PP_1937	0.52	+2.1
2,190,857	+		PP_1937	0.53	+0.4
2,190,858	-		PP_1937	0.53	+0.6
2,190,947	+		PP_1937	0.56	-1.1
2,190,959	+		PP_1937	0.56	+0.1
2,191,022	-		PP_1937	0.58	+0.0
2,191,049	+		PP_1937	0.59	-0.2
2,191,050	+		PP_1937	0.59	+0.7
2,191,050	+		PP_1937	0.59	+1.0
2,191,050	+		PP_1937	0.59	+0.6
2,191,051	-		PP_1937	0.59	-1.1
2,191,116	+		PP_1937	0.61	+0.2
2,191,117	-		PP_1937	0.61	+0.9
2,191,117	-		PP_1937	0.61	+1.0
2,191,117	-		PP_1937	0.61	+0.3
2,191,211	+		PP_1937	0.64	+0.5
2,191,211	+		PP_1937	0.64	+0.7
2,191,212	-		PP_1937	0.64	-0.5
2,191,245	+		PP_1937	0.65	-0.3
2,191,245	+		PP_1937	0.65	+0.2
2,191,362	+		PP_1937	0.68	-1.2
2,191,397	+		PP_1937	0.69	+0.2
2,191,397	+		PP_1937	0.69	-0.3
2,191,398	-		PP_1937	0.69	+0.5
2,191,711	+		PP_1937	0.79	-0.6
2,191,711	+		PP_1937	0.79	-0.3
2,191,712	-		PP_1937	0.79	+0.7
2,191,712	-				+1.2
2,191,721	-		PP_1937	0.79	-0.0
2,191,735	-		PP_1937	0.80	+0.6
2,191,901	+		PP_1937	0.85	-1.0
2,191,902	-		PP_1937	0.85	+0.6
2,191,994	+		PP_1937	0.88	+0.3
2,191,995	-		PP_1937	0.88	+0.6
2,191,995	-		PP_1937	0.88	-0.3
2,192,043	-		PP_1937	0.89	+1.6
2,192,048	+		PP_1937	0.89	+1.0
2,192,049	-		PP_1937	0.89	+1.3
2,192,101	-				-0.0
2,192,101	-				+1.6
2,192,121	+				+0.0
2,192,122	-				+1.2
2,192,122	-				+0.2
2,192,246	+				+0.7
2,192,246	+				-0.4
2,192,268	-				-0.9
2,192,268	-				+0.7
2,192,295	+				-0.2
2,192,359	-				-0.8
2,192,359	-				-0.1
2,192,459	-				+0.3
2,192,467	-				+0.9
2,192,505	-				+0.2
2,192,505	-				+0.7
2,192,527	-				+0.1
2,192,555	-				+0.4
2,192,565	+				+0.4
2,192,566	-				-0.5
2,192,593	-				+0.8
2,192,624	+				+0.5
2,192,624	+				+0.6
2,192,625	-				+0.0
2,192,752	+		PP_1938	0.50	-0.4
2,192,789	-		PP_1938	0.62	+0.2
2,192,910	+				+1.2
2,192,910	+				+0.2
2,192,910	+				-0.0
2,192,911	-				+1.2
2,192,911	-				+0.2
2,192,911	-				-0.8
2,192,911	-				+1.0
2,192,911	-				+0.2
2,192,917	-				+1.0
2,192,926	+				+0.3
2,192,926	+				+0.2
2,192,926	+				-1.8
2,192,927	-				-0.9
2,192,927	-				+0.1
2,192,932	+				+0.3
2,192,950	+				-0.0
2,192,950	+				-0.0
2,192,950	+				+0.2
2,192,950	+				-0.5
2,192,950	+				+0.1
2,192,954	+				+0.1
2,192,954	+				-0.1
2,192,954	+				+0.0
2,192,955	-				+1.7
2,193,049	+				-0.1
2,193,049	+				-0.5
2,193,049	+				+0.2
2,193,050	-				+0.4
2,193,050	-				+0.2
2,193,050	-				-0.1
2,193,050	-				+1.6
2,193,050	-				-0.1
2,193,100	+				-0.0
2,193,100	+				+0.5
2,193,100	+				+0.8
2,193,100	+				+0.9
2,193,100	+				-0.0
2,193,101	-				-1.0
2,193,101	-				+0.7
2,193,103	+				-0.1
2,193,104	-				+0.1
2,193,119	-				-0.4
2,193,138	+				-0.1
2,193,138	+				+0.8
2,193,199	+				+0.5
2,193,199	+				+0.8
2,193,199	+				+0.8
2,193,199	+				+0.2
2,193,199	+				+0.8
2,193,200	-				+0.0
2,193,200	-				+0.2
2,193,200	-				-0.6
2,193,200	-				+0.6
2,193,296	+				-0.7
2,193,315	+				+0.8
2,193,315	+				+0.1