Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3065

Experiment: Methyl alpha-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3064 and Echvi_3065 are separated by 64 nucleotidesEchvi_3065 and Echvi_3066 are separated by 59 nucleotides Echvi_3064: Echvi_3064 - FeS assembly protein SufB, at 3,657,246 to 3,658,691 _3064 Echvi_3065: Echvi_3065 - hypothetical protein, at 3,658,756 to 3,658,893 _3065 Echvi_3066: Echvi_3066 - Transcriptional regulators, at 3,658,953 to 3,659,429 _3066 Position (kb) 3658 3659Strain fitness (log2 ratio) -1 0 1at 3658.743 kb on - strandat 3658.790 kb on + strand, within Echvi_3065at 3658.896 kb on - strandat 3659.676 kb on - strandat 3659.730 kb on + strandat 3659.731 kb on - strandat 3659.819 kb on - strandat 3659.819 kb on - strandat 3659.821 kb on + strandat 3659.822 kb on - strandat 3659.831 kb on - strandat 3659.831 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl alpha-D-glucopyranoside (C)
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3,658,743 - -0.0
3,658,790 + Echvi_3065 0.25 +0.2
3,658,896 - +0.4
3,659,676 - -0.1
3,659,730 + -0.1
3,659,731 - -0.5
3,659,819 - -0.6
3,659,819 - +0.3
3,659,821 + +0.0
3,659,822 - +0.1
3,659,831 - -0.4
3,659,831 - -0.1

Or see this region's nucleotide sequence