Experiment: Lignin Monomers (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5186 and PP_5187 are separated by 116 nucleotides PP_5187 and PP_5188 are separated by 94 nucleotides PP_5188 and PP_5189 are separated by 126 nucleotides
PP_5186: PP_5186 - acetylornithine deacetylase, at 5,915,684 to 5,916,826
_5186
PP_5187: PP_5187 - putative thiamine triphosphatase, at 5,916,943 to 5,918,310
_5187
PP_5188: PP_5188 - putative transcriptional regulator (AsnC/Lrp family), at 5,918,405 to 5,918,875
_5188
PP_5189: PP_5189 - conserved protein of unknown function, at 5,919,002 to 5,919,307
_5189
Position (kb) 5916
5917
5918
5919 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5915.956 kb on - strand, within PP_5186 at 5916.082 kb on + strand, within PP_5186 at 5916.083 kb on - strand, within PP_5186 at 5916.157 kb on + strand, within PP_5186 at 5916.157 kb on + strand, within PP_5186 at 5916.158 kb on - strand, within PP_5186 at 5916.158 kb on - strand, within PP_5186 at 5916.158 kb on - strand, within PP_5186 at 5916.158 kb on - strand, within PP_5186 at 5916.159 kb on + strand, within PP_5186 at 5916.159 kb on + strand, within PP_5186 at 5916.159 kb on + strand, within PP_5186 at 5916.159 kb on + strand, within PP_5186 at 5916.159 kb on + strand, within PP_5186 at 5916.160 kb on - strand, within PP_5186 at 5916.160 kb on - strand, within PP_5186 at 5916.160 kb on - strand, within PP_5186 at 5916.833 kb on - strand at 5916.857 kb on + strand at 5916.857 kb on + strand at 5916.857 kb on + strand at 5916.857 kb on + strand at 5916.858 kb on - strand at 5916.858 kb on - strand at 5916.858 kb on - strand at 5916.858 kb on - strand at 5916.863 kb on + strand at 5916.864 kb on - strand at 5916.879 kb on + strand at 5916.879 kb on + strand at 5916.904 kb on - strand at 5917.066 kb on + strand at 5917.066 kb on + strand at 5917.327 kb on + strand, within PP_5187 at 5917.567 kb on + strand, within PP_5187 at 5917.568 kb on - strand, within PP_5187 at 5917.568 kb on - strand, within PP_5187 at 5917.568 kb on - strand, within PP_5187 at 5917.624 kb on + strand, within PP_5187 at 5917.910 kb on + strand, within PP_5187 at 5917.910 kb on + strand, within PP_5187 at 5918.072 kb on - strand, within PP_5187 at 5918.113 kb on - strand, within PP_5187 at 5918.182 kb on + strand at 5918.334 kb on + strand at 5918.346 kb on + strand at 5918.346 kb on + strand at 5918.347 kb on - strand at 5918.347 kb on - strand at 5918.379 kb on - strand at 5918.425 kb on + strand at 5918.518 kb on - strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.622 kb on + strand, within PP_5188 at 5918.877 kb on - strand at 5918.906 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.999 kb on - strand at 5919.001 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lignin Monomers (C) remove 5,915,956 - PP_5186 0.24 +0.2 5,916,082 + PP_5186 0.35 -1.0 5,916,083 - PP_5186 0.35 -0.7 5,916,157 + PP_5186 0.41 -0.3 5,916,157 + PP_5186 0.41 +0.7 5,916,158 - PP_5186 0.41 -0.4 5,916,158 - PP_5186 0.41 +1.1 5,916,158 - PP_5186 0.41 -1.4 5,916,158 - PP_5186 0.41 +0.7 5,916,159 + PP_5186 0.42 -0.4 5,916,159 + PP_5186 0.42 -1.8 5,916,159 + PP_5186 0.42 +1.1 5,916,159 + PP_5186 0.42 -0.0 5,916,159 + PP_5186 0.42 +1.0 5,916,160 - PP_5186 0.42 -1.7 5,916,160 - PP_5186 0.42 -0.9 5,916,160 - PP_5186 0.42 -1.5 5,916,833 - -1.0 5,916,857 + +1.1 5,916,857 + -0.6 5,916,857 + -0.5 5,916,857 + +0.3 5,916,858 - +0.4 5,916,858 - -1.1 5,916,858 - -0.0 5,916,858 - -0.1 5,916,863 + +0.2 5,916,864 - -0.3 5,916,879 + +0.2 5,916,879 + -0.3 5,916,904 - -0.2 5,917,066 + +2.3 5,917,066 + -0.6 5,917,327 + PP_5187 0.28 -1.2 5,917,567 + PP_5187 0.46 -0.7 5,917,568 - PP_5187 0.46 -0.3 5,917,568 - PP_5187 0.46 -0.8 5,917,568 - PP_5187 0.46 +0.8 5,917,624 + PP_5187 0.50 +0.2 5,917,910 + PP_5187 0.71 +0.1 5,917,910 + PP_5187 0.71 -0.3 5,918,072 - PP_5187 0.83 -2.2 5,918,113 - PP_5187 0.86 -1.5 5,918,182 + -0.1 5,918,334 + -0.9 5,918,346 + +1.1 5,918,346 + +1.6 5,918,347 - -2.1 5,918,347 - +0.2 5,918,379 - -1.0 5,918,425 + +0.2 5,918,518 - PP_5188 0.24 -0.0 5,918,577 + PP_5188 0.37 +0.5 5,918,577 + PP_5188 0.37 -1.1 5,918,577 + PP_5188 0.37 -1.9 5,918,577 + PP_5188 0.37 +0.1 5,918,578 - PP_5188 0.37 +0.4 5,918,578 - PP_5188 0.37 +1.3 5,918,578 - PP_5188 0.37 +1.3 5,918,578 - PP_5188 0.37 +0.4 5,918,578 - PP_5188 0.37 -0.3 5,918,578 - PP_5188 0.37 +1.4 5,918,622 + PP_5188 0.46 +1.0 5,918,877 - +2.0 5,918,906 + +0.6 5,918,998 + +0.4 5,918,998 + +2.3 5,918,998 + -1.1 5,918,998 + +0.4 5,918,998 + -2.0 5,918,998 + +0.2 5,918,999 - -0.0 5,919,001 + +0.4
Or see this region's nucleotide sequence