Experiment: Lignin Monomers (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0264 and PP_0265 are separated by 42 nucleotides PP_0265 and PP_0266 are separated by 277 nucleotides PP_0266 and PP_0267 are separated by 457 nucleotides
PP_0264: PP_0264 - Sensor histidine kinase, at 317,927 to 319,741
_0264
PP_0265: PP_0265 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 319,784 to 320,329
_0265
PP_0266: PP_0266 - Agmatine deiminase, at 320,607 to 321,713
_0266
PP_0267: PP_0267 - putative Outer membrane ferric siderophore receptor, at 322,171 to 324,240
_0267
Position (kb) 320
321
322 Strain fitness (log2 ratio) -2
-1
0
1
2 at 319.629 kb on + strand at 319.629 kb on + strand at 319.629 kb on + strand at 319.632 kb on + strand at 319.632 kb on + strand at 319.632 kb on + strand at 319.633 kb on - strand at 319.633 kb on - strand at 319.662 kb on - strand at 319.662 kb on - strand at 319.662 kb on - strand at 319.664 kb on + strand at 319.664 kb on + strand at 319.664 kb on + strand at 319.664 kb on + strand at 319.665 kb on - strand at 319.774 kb on + strand at 319.775 kb on - strand at 319.775 kb on - strand at 319.775 kb on - strand at 319.781 kb on + strand at 319.781 kb on + strand at 319.782 kb on - strand at 319.782 kb on - strand at 319.786 kb on - strand at 319.786 kb on - strand at 319.897 kb on + strand, within PP_0265 at 319.898 kb on - strand, within PP_0265 at 319.920 kb on + strand, within PP_0265 at 319.920 kb on + strand, within PP_0265 at 319.920 kb on + strand, within PP_0265 at 319.923 kb on + strand, within PP_0265 at 319.924 kb on - strand, within PP_0265 at 319.924 kb on - strand, within PP_0265 at 319.938 kb on + strand, within PP_0265 at 320.143 kb on - strand, within PP_0265 at 320.297 kb on + strand at 320.298 kb on - strand at 320.298 kb on - strand at 320.298 kb on - strand at 320.298 kb on - strand at 320.314 kb on + strand at 320.356 kb on + strand at 320.357 kb on - strand at 320.357 kb on - strand at 320.357 kb on - strand at 320.357 kb on - strand at 320.366 kb on - strand at 320.366 kb on - strand at 320.395 kb on - strand at 320.412 kb on + strand at 320.412 kb on + strand at 320.412 kb on + strand at 320.412 kb on + strand at 320.413 kb on - strand at 320.413 kb on - strand at 320.413 kb on - strand at 320.413 kb on - strand at 320.413 kb on - strand at 320.423 kb on + strand at 320.423 kb on + strand at 320.424 kb on - strand at 320.424 kb on - strand at 320.428 kb on + strand at 320.681 kb on - strand at 320.681 kb on - strand at 320.681 kb on - strand at 320.749 kb on + strand, within PP_0266 at 320.900 kb on + strand, within PP_0266 at 320.900 kb on + strand, within PP_0266 at 320.938 kb on + strand, within PP_0266 at 320.938 kb on + strand, within PP_0266 at 320.938 kb on + strand, within PP_0266 at 320.939 kb on - strand, within PP_0266 at 320.982 kb on + strand, within PP_0266 at 320.982 kb on + strand, within PP_0266 at 320.982 kb on + strand, within PP_0266 at 321.091 kb on + strand, within PP_0266 at 321.091 kb on + strand, within PP_0266 at 321.092 kb on - strand at 321.214 kb on + strand, within PP_0266 at 321.214 kb on + strand, within PP_0266 at 321.215 kb on - strand, within PP_0266 at 321.234 kb on + strand, within PP_0266 at 321.234 kb on + strand, within PP_0266 at 321.235 kb on - strand, within PP_0266 at 321.276 kb on + strand, within PP_0266 at 321.276 kb on + strand, within PP_0266 at 321.299 kb on - strand, within PP_0266 at 321.299 kb on - strand, within PP_0266 at 321.299 kb on - strand, within PP_0266 at 321.334 kb on - strand, within PP_0266 at 321.334 kb on - strand, within PP_0266 at 321.334 kb on - strand, within PP_0266 at 321.334 kb on - strand, within PP_0266 at 321.516 kb on + strand, within PP_0266 at 321.516 kb on + strand, within PP_0266 at 321.516 kb on + strand, within PP_0266 at 321.516 kb on + strand, within PP_0266 at 321.516 kb on + strand, within PP_0266 at 321.517 kb on - strand, within PP_0266 at 321.517 kb on - strand, within PP_0266 at 321.517 kb on - strand, within PP_0266 at 321.790 kb on + strand at 321.818 kb on - strand at 321.818 kb on - strand at 321.860 kb on + strand at 321.860 kb on + strand at 321.860 kb on + strand at 321.868 kb on + strand at 321.868 kb on + strand at 321.895 kb on + strand at 321.896 kb on - strand at 322.166 kb on + strand at 322.181 kb on + strand at 322.181 kb on + strand at 322.181 kb on + strand at 322.182 kb on - strand at 322.182 kb on - strand at 322.250 kb on + strand at 322.250 kb on + strand at 322.250 kb on + strand at 322.250 kb on + strand at 322.251 kb on - strand at 322.251 kb on - strand at 322.251 kb on - strand at 322.253 kb on + strand at 322.253 kb on + strand at 322.253 kb on + strand at 322.254 kb on - strand at 322.254 kb on - strand at 322.338 kb on - strand at 322.338 kb on - strand at 322.345 kb on + strand at 322.345 kb on + strand at 322.346 kb on - strand at 322.346 kb on - strand at 322.346 kb on - strand at 322.348 kb on + strand at 322.348 kb on + strand at 322.348 kb on + strand at 322.348 kb on + strand at 322.349 kb on - strand at 322.410 kb on - strand, within PP_0267 at 322.540 kb on + strand, within PP_0267 at 322.541 kb on - strand, within PP_0267 at 322.541 kb on - strand, within PP_0267 at 322.541 kb on - strand, within PP_0267 at 322.541 kb on - strand, within PP_0267 at 322.541 kb on - strand, within PP_0267 at 322.655 kb on + strand, within PP_0267 at 322.656 kb on - strand, within PP_0267 at 322.670 kb on + strand, within PP_0267 at 322.670 kb on + strand, within PP_0267 at 322.670 kb on + strand, within PP_0267
Per-strain Table
Position Strand Gene LocusTag Fraction Lignin Monomers (C) remove 319,629 + +1.0 319,629 + -1.7 319,629 + -0.3 319,632 + -0.7 319,632 + -0.7 319,632 + -0.6 319,633 - -0.1 319,633 - +1.9 319,662 - +1.1 319,662 - +0.2 319,662 - -0.0 319,664 + -0.6 319,664 + +0.9 319,664 + +1.9 319,664 + +0.9 319,665 - +0.4 319,774 + +0.0 319,775 - +0.3 319,775 - -0.9 319,775 - +0.9 319,781 + -0.8 319,781 + -1.1 319,782 - -1.0 319,782 - +0.5 319,786 - -0.1 319,786 - -0.8 319,897 + PP_0265 0.21 +0.4 319,898 - PP_0265 0.21 +0.4 319,920 + PP_0265 0.25 -0.2 319,920 + PP_0265 0.25 +0.5 319,920 + PP_0265 0.25 +0.3 319,923 + PP_0265 0.25 -1.0 319,924 - PP_0265 0.26 +0.7 319,924 - PP_0265 0.26 +0.4 319,938 + PP_0265 0.28 +1.2 320,143 - PP_0265 0.66 -0.1 320,297 + -1.2 320,298 - -0.1 320,298 - -0.6 320,298 - -0.3 320,298 - -0.7 320,314 + +0.6 320,356 + +0.7 320,357 - +0.2 320,357 - +0.0 320,357 - -1.5 320,357 - +0.0 320,366 - -0.4 320,366 - +0.1 320,395 - -2.6 320,412 + +0.3 320,412 + -0.4 320,412 + +1.4 320,412 + +0.4 320,413 - -0.5 320,413 - -1.3 320,413 - +0.6 320,413 - +0.3 320,413 - -0.1 320,423 + -0.9 320,423 + +0.7 320,424 - +0.2 320,424 - +0.1 320,428 + -0.1 320,681 - +1.1 320,681 - +1.2 320,681 - +1.2 320,749 + PP_0266 0.13 +0.6 320,900 + PP_0266 0.26 +0.9 320,900 + PP_0266 0.26 -1.2 320,938 + PP_0266 0.30 +1.5 320,938 + PP_0266 0.30 +0.5 320,938 + PP_0266 0.30 +0.3 320,939 - PP_0266 0.30 +1.3 320,982 + PP_0266 0.34 +0.7 320,982 + PP_0266 0.34 +0.0 320,982 + PP_0266 0.34 -0.4 321,091 + PP_0266 0.44 +0.3 321,091 + PP_0266 0.44 -0.1 321,092 - -0.1 321,214 + PP_0266 0.55 +0.5 321,214 + PP_0266 0.55 +0.2 321,215 - PP_0266 0.55 +0.3 321,234 + PP_0266 0.57 +0.8 321,234 + PP_0266 0.57 -0.1 321,235 - PP_0266 0.57 +1.3 321,276 + PP_0266 0.60 +1.5 321,276 + PP_0266 0.60 +2.5 321,299 - PP_0266 0.63 +0.1 321,299 - PP_0266 0.63 +1.2 321,299 - PP_0266 0.63 +0.6 321,334 - PP_0266 0.66 -0.3 321,334 - PP_0266 0.66 +1.0 321,334 - PP_0266 0.66 +1.3 321,334 - PP_0266 0.66 +0.5 321,516 + PP_0266 0.82 +0.3 321,516 + PP_0266 0.82 +1.1 321,516 + PP_0266 0.82 -0.2 321,516 + PP_0266 0.82 +0.6 321,516 + PP_0266 0.82 -0.9 321,517 - PP_0266 0.82 -1.2 321,517 - PP_0266 0.82 +1.9 321,517 - PP_0266 0.82 +1.7 321,790 + -0.1 321,818 - -0.2 321,818 - -0.4 321,860 + -1.4 321,860 + -1.3 321,860 + -1.2 321,868 + +0.3 321,868 + -0.7 321,895 + -0.2 321,896 - -1.7 322,166 + +0.8 322,181 + -0.9 322,181 + +0.4 322,181 + -1.2 322,182 - +1.4 322,182 - -0.7 322,250 + -0.6 322,250 + -0.4 322,250 + +1.0 322,250 + +0.4 322,251 - -0.5 322,251 - +1.3 322,251 - -0.4 322,253 + -0.2 322,253 + +0.6 322,253 + -0.0 322,254 - -0.3 322,254 - -0.3 322,338 - -0.2 322,338 - +0.1 322,345 + +0.0 322,345 + -1.7 322,346 - -0.3 322,346 - -0.3 322,346 - -1.0 322,348 + -1.4 322,348 + -0.1 322,348 + -0.6 322,348 + -0.7 322,349 - +0.2 322,410 - PP_0267 0.12 -0.3 322,540 + PP_0267 0.18 -0.9 322,541 - PP_0267 0.18 -0.5 322,541 - PP_0267 0.18 -0.8 322,541 - PP_0267 0.18 -0.0 322,541 - PP_0267 0.18 -1.3 322,541 - PP_0267 0.18 -0.2 322,655 + PP_0267 0.23 +1.4 322,656 - PP_0267 0.23 +0.3 322,670 + PP_0267 0.24 +0.2 322,670 + PP_0267 0.24 +0.5 322,670 + PP_0267 0.24 +0.1
Or see this region's nucleotide sequence