Strain Fitness in Pseudomonas putida KT2440 around PP_0059

Experiment: Lignin Monomers (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0058 and PP_0059 are separated by 46 nucleotidesPP_0059 and PP_0060 are separated by 3 nucleotides PP_0058: PP_0058 - putative 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 68,487 to 69,272 _0058 PP_0059: PP_0059 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase, at 69,319 to 69,846 _0059 PP_0060: PP_0060 - glycine-tRNA ligase beta subunit, at 69,850 to 71,904 _0060 Position (kb) 69 70Strain fitness (log2 ratio) -1 0 1 2 3at 68.326 kb on + strandat 68.327 kb on - strandat 68.342 kb on - strandat 68.617 kb on + strand, within PP_0058at 68.618 kb on - strand, within PP_0058at 68.634 kb on + strand, within PP_0058at 68.634 kb on + strand, within PP_0058at 68.781 kb on + strand, within PP_0058at 68.859 kb on + strand, within PP_0058at 68.931 kb on + strand, within PP_0058at 68.931 kb on + strand, within PP_0058at 68.932 kb on - strand, within PP_0058at 68.932 kb on - strand, within PP_0058at 68.932 kb on - strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.964 kb on - strand, within PP_0058at 68.977 kb on + strand, within PP_0058at 69.071 kb on - strand, within PP_0058at 69.071 kb on - strand, within PP_0058at 69.121 kb on + strand, within PP_0058at 69.122 kb on - strand, within PP_0058at 69.139 kb on + strand, within PP_0058at 69.140 kb on - strand, within PP_0058at 69.220 kb on + strandat 69.258 kb on - strandat 69.258 kb on - strandat 69.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lignin Monomers (C)
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68,326 + +1.1
68,327 - +0.2
68,342 - +0.6
68,617 + PP_0058 0.17 +2.9
68,618 - PP_0058 0.17 +2.6
68,634 + PP_0058 0.19 +2.6
68,634 + PP_0058 0.19 +3.0
68,781 + PP_0058 0.37 +2.5
68,859 + PP_0058 0.47 +3.1
68,931 + PP_0058 0.56 +2.7
68,931 + PP_0058 0.56 +2.5
68,932 - PP_0058 0.57 +2.9
68,932 - PP_0058 0.57 +2.5
68,932 - PP_0058 0.57 +2.5
68,935 + PP_0058 0.57 +2.9
68,935 + PP_0058 0.57 +3.1
68,935 + PP_0058 0.57 +2.9
68,935 + PP_0058 0.57 +2.7
68,935 + PP_0058 0.57 +3.0
68,935 + PP_0058 0.57 +2.2
68,935 + PP_0058 0.57 +2.8
68,935 + PP_0058 0.57 +2.8
68,936 - PP_0058 0.57 +2.5
68,936 - PP_0058 0.57 +2.8
68,936 - PP_0058 0.57 +2.8
68,936 - PP_0058 0.57 +2.5
68,936 - PP_0058 0.57 +2.7
68,936 - PP_0058 0.57 +2.9
68,964 - PP_0058 0.61 +2.6
68,977 + PP_0058 0.62 +2.5
69,071 - PP_0058 0.74 +2.6
69,071 - PP_0058 0.74 +2.8
69,121 + PP_0058 0.81 +2.6
69,122 - PP_0058 0.81 +2.5
69,139 + PP_0058 0.83 +2.7
69,140 - PP_0058 0.83 +2.7
69,220 + +2.9
69,258 - +2.5
69,258 - +3.4
69,268 - +0.4

Or see this region's nucleotide sequence