Strain Fitness in Escherichia coli BW25113 around b0878

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybjX and b0878 are separated by 114 nucleotidesb0878 and macB overlap by 4 nucleotides b0877: ybjX - hypothetical protein (NCBI), at 917,351 to 918,343 ybjX b0878: b0878 - putative membrane protein (VIMSS), at 918,458 to 919,573 b0878 b0879: macB - fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component (NCBI), at 919,570 to 921,516 macB Position (kb) 918 919 920Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 917.467 kb on + strand, within ybjXat 917.467 kb on + strand, within ybjXat 917.528 kb on + strand, within ybjXat 917.528 kb on + strand, within ybjXat 917.643 kb on - strand, within ybjXat 917.658 kb on - strand, within ybjXat 917.658 kb on - strand, within ybjXat 917.775 kb on + strand, within ybjXat 917.828 kb on + strand, within ybjXat 917.838 kb on + strand, within ybjXat 917.878 kb on + strand, within ybjXat 917.878 kb on + strand, within ybjXat 917.891 kb on - strand, within ybjXat 917.948 kb on - strand, within ybjXat 918.050 kb on - strand, within ybjXat 918.059 kb on + strand, within ybjXat 918.271 kb on + strandat 918.484 kb on + strandat 918.620 kb on + strand, within b0878at 918.789 kb on - strand, within b0878at 918.849 kb on - strandat 918.849 kb on - strand, within b0878at 918.985 kb on + strand, within b0878at 919.227 kb on - strand, within b0878at 919.262 kb on + strand, within b0878at 919.262 kb on + strand, within b0878at 919.298 kb on - strand, within b0878at 919.298 kb on - strand, within b0878at 919.343 kb on + strand, within b0878at 919.557 kb on - strandat 919.636 kb on + strandat 919.765 kb on + strand, within macBat 919.979 kb on + strand, within macBat 919.979 kb on + strand, within macBat 919.994 kb on - strand, within macBat 919.994 kb on - strand, within macBat 920.012 kb on + strandat 920.023 kb on + strand, within macBat 920.068 kb on - strand, within macBat 920.199 kb on - strand, within macBat 920.267 kb on + strand, within macBat 920.415 kb on - strand, within macBat 920.443 kb on + strand, within macBat 920.458 kb on - strand, within macBat 920.459 kb on + strand, within macBat 920.459 kb on + strand, within macB

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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917,467 + ybjX b0877 0.12 +1.4
917,467 + ybjX b0877 0.12 +1.5
917,528 + ybjX b0877 0.18 +0.3
917,528 + ybjX b0877 0.18 +0.5
917,643 - ybjX b0877 0.29 +1.2
917,658 - ybjX b0877 0.31 +0.5
917,658 - ybjX b0877 0.31 -0.7
917,775 + ybjX b0877 0.43 +0.8
917,828 + ybjX b0877 0.48 +1.0
917,838 + ybjX b0877 0.49 -1.8
917,878 + ybjX b0877 0.53 +1.4
917,878 + ybjX b0877 0.53 -2.2
917,891 - ybjX b0877 0.54 +0.8
917,948 - ybjX b0877 0.60 +1.1
918,050 - ybjX b0877 0.70 +1.8
918,059 + ybjX b0877 0.71 +0.2
918,271 + -0.9
918,484 + +1.6
918,620 + b0878 b0878 0.15 -0.1
918,789 - b0878 b0878 0.30 +1.1
918,849 - +1.2
918,849 - b0878 b0878 0.35 +1.2
918,985 + b0878 b0878 0.47 -0.4
919,227 - b0878 b0878 0.69 -1.3
919,262 + b0878 b0878 0.72 -0.2
919,262 + b0878 b0878 0.72 -2.8
919,298 - b0878 b0878 0.75 -0.4
919,298 - b0878 b0878 0.75 +1.8
919,343 + b0878 b0878 0.79 +1.2
919,557 - +1.2
919,636 + -0.8
919,765 + macB b0879 0.10 +2.2
919,979 + macB b0879 0.21 +0.8
919,979 + macB b0879 0.21 +2.4
919,994 - macB b0879 0.22 -0.3
919,994 - macB b0879 0.22 +0.2
920,012 + +2.7
920,023 + macB b0879 0.23 -2.5
920,068 - macB b0879 0.26 -1.2
920,199 - macB b0879 0.32 +1.0
920,267 + macB b0879 0.36 +0.1
920,415 - macB b0879 0.43 +1.9
920,443 + macB b0879 0.45 +0.9
920,458 - macB b0879 0.46 -1.5
920,459 + macB b0879 0.46 -0.9
920,459 + macB b0879 0.46 -2.2

Or see this region's nucleotide sequence