Strain Fitness in Pseudomonas putida KT2440 around PP_1074

Experiment: Lignin Monomers (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1073 and PP_1074 are separated by 216 nucleotidesPP_1074 and PP_1075 are separated by 101 nucleotides PP_1073: PP_1073 - glycerol-3-phosphate dehydrogenase (aerobic), at 1,231,168 to 1,232,712 _1073 PP_1074: PP_1074 - DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate, at 1,232,929 to 1,233,684 _1074 PP_1075: PP_1075 - glycerol kinase, at 1,233,786 to 1,235,285 _1075 Position (kb) 1232 1233 1234Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1232.974 kb on - strandat 1233.322 kb on - strand, within PP_1074at 1233.322 kb on - strand, within PP_1074at 1233.431 kb on - strand, within PP_1074at 1233.485 kb on + strand, within PP_1074at 1233.512 kb on + strand, within PP_1074at 1233.513 kb on - strand, within PP_1074at 1233.629 kb on + strandat 1233.630 kb on - strandat 1233.630 kb on - strandat 1233.730 kb on - strandat 1233.750 kb on + strandat 1233.784 kb on + strandat 1233.784 kb on + strandat 1233.784 kb on + strandat 1233.784 kb on + strandat 1233.785 kb on - strandat 1233.785 kb on - strandat 1233.785 kb on - strandat 1233.785 kb on - strandat 1233.785 kb on - strandat 1233.844 kb on + strandat 1233.844 kb on + strandat 1233.844 kb on + strandat 1233.844 kb on + strandat 1233.958 kb on + strand, within PP_1075at 1233.959 kb on - strand, within PP_1075at 1234.136 kb on - strand, within PP_1075at 1234.173 kb on + strand, within PP_1075at 1234.174 kb on - strand, within PP_1075at 1234.174 kb on - strand, within PP_1075at 1234.216 kb on + strand, within PP_1075at 1234.216 kb on + strand, within PP_1075at 1234.265 kb on - strand, within PP_1075at 1234.359 kb on - strand, within PP_1075at 1234.359 kb on - strand, within PP_1075at 1234.359 kb on - strand, within PP_1075at 1234.393 kb on + strand, within PP_1075at 1234.394 kb on - strand, within PP_1075at 1234.394 kb on - strand, within PP_1075at 1234.394 kb on - strand, within PP_1075at 1234.498 kb on + strand, within PP_1075at 1234.499 kb on - strand, within PP_1075at 1234.499 kb on - strand, within PP_1075at 1234.499 kb on - strand, within PP_1075at 1234.502 kb on + strand, within PP_1075at 1234.502 kb on + strand, within PP_1075at 1234.502 kb on + strand, within PP_1075at 1234.502 kb on + strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.581 kb on + strand, within PP_1075at 1234.581 kb on + strand, within PP_1075at 1234.582 kb on - strand, within PP_1075at 1234.604 kb on - strand, within PP_1075

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Per-strain Table

Position Strand Gene LocusTag Fraction Lignin Monomers (C)
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1,232,974 - +1.9
1,233,322 - PP_1074 0.52 -0.7
1,233,322 - PP_1074 0.52 -0.8
1,233,431 - PP_1074 0.66 +0.5
1,233,485 + PP_1074 0.74 +0.5
1,233,512 + PP_1074 0.77 -2.0
1,233,513 - PP_1074 0.77 -0.6
1,233,629 + -0.9
1,233,630 - -0.2
1,233,630 - -1.9
1,233,730 - -2.2
1,233,750 + +2.0
1,233,784 + +3.2
1,233,784 + +3.4
1,233,784 + +3.0
1,233,784 + +3.6
1,233,785 - +3.1
1,233,785 - +3.3
1,233,785 - +3.2
1,233,785 - +2.9
1,233,785 - +3.1
1,233,844 + +3.3
1,233,844 + +2.9
1,233,844 + +2.8
1,233,844 + +3.6
1,233,958 + PP_1075 0.11 +3.5
1,233,959 - PP_1075 0.12 +4.3
1,234,136 - PP_1075 0.23 +3.8
1,234,173 + PP_1075 0.26 +3.8
1,234,174 - PP_1075 0.26 +3.2
1,234,174 - PP_1075 0.26 +3.5
1,234,216 + PP_1075 0.29 +2.6
1,234,216 + PP_1075 0.29 +3.7
1,234,265 - PP_1075 0.32 +4.3
1,234,359 - PP_1075 0.38 +4.2
1,234,359 - PP_1075 0.38 +2.6
1,234,359 - PP_1075 0.38 +3.6
1,234,393 + PP_1075 0.40 +3.3
1,234,394 - PP_1075 0.41 +3.0
1,234,394 - PP_1075 0.41 +3.2
1,234,394 - PP_1075 0.41 +3.7
1,234,498 + PP_1075 0.47 +2.6
1,234,499 - PP_1075 0.48 +2.6
1,234,499 - PP_1075 0.48 +3.3
1,234,499 - PP_1075 0.48 +3.7
1,234,502 + PP_1075 0.48 +4.1
1,234,502 + PP_1075 0.48 +3.8
1,234,502 + PP_1075 0.48 +3.6
1,234,502 + PP_1075 0.48 +4.2
1,234,503 - PP_1075 0.48 +3.6
1,234,503 - PP_1075 0.48 +3.9
1,234,503 - PP_1075 0.48 +3.2
1,234,503 - PP_1075 0.48 +3.1
1,234,503 - PP_1075 0.48 +3.4
1,234,503 - PP_1075 0.48 +3.4
1,234,503 - PP_1075 0.48 +3.9
1,234,581 + PP_1075 0.53 +3.7
1,234,581 + PP_1075 0.53 +3.5
1,234,582 - PP_1075 0.53 +3.5
1,234,604 - PP_1075 0.55 +3.2

Or see this region's nucleotide sequence