Strain Fitness in Pseudomonas putida KT2440 around PP_5366

Experiment: D-Glucuronic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucuronic Acid (C)
6,114,845	+		PP_5365	0.35	+0.6
6,114,846	-		PP_5365	0.35	+0.0
6,114,882	+		PP_5365	0.37	+0.2
6,114,882	+		PP_5365	0.37	+0.0
6,114,883	-		PP_5365	0.38	+0.6
6,114,883	-		PP_5365	0.38	+0.2
6,115,021	-		PP_5365	0.48	-0.1
6,115,044	-		PP_5365	0.50	+1.3
6,115,100	+		PP_5365	0.54	+0.8
6,115,100	+		PP_5365	0.54	-0.8
6,115,170	+		PP_5365	0.60	-0.6
6,115,171	-		PP_5365	0.60	+0.4
6,115,171	-		PP_5365	0.60	+0.1
6,115,191	-		PP_5365	0.61	-0.4
6,115,191	-		PP_5365	0.61	-0.5
6,115,202	+		PP_5365	0.62	+0.4
6,115,202	+		PP_5365	0.62	-0.4
6,115,203	-		PP_5365	0.62	+1.4
6,115,203	-		PP_5365	0.62	-0.2
6,115,232	+		PP_5365	0.65	+0.6
6,115,232	+		PP_5365	0.65	-0.2
6,115,233	-		PP_5365	0.65	-0.3
6,115,253	+		PP_5365	0.66	+0.0
6,115,254	-		PP_5365	0.66	+0.4
6,115,254	-		PP_5365	0.66	+0.1
6,115,254	-		PP_5365	0.66	+0.8
6,115,254	-		PP_5365	0.66	-0.3
6,115,254	-		PP_5365	0.66	-0.5
6,115,254	-		PP_5365	0.66	+2.4
6,115,420	+		PP_5365	0.79	-1.2
6,115,420	+		PP_5365	0.79	+0.8
6,115,421	-		PP_5365	0.79	+0.6
6,115,421	-		PP_5365	0.79	+0.9
6,115,495	-		PP_5365	0.85	-0.1
6,115,495	-		PP_5365	0.85	+0.3
6,115,605	-				+0.6
6,115,605	-				+0.0
6,115,605	-				+0.3
6,115,621	+				-1.0
6,115,621	+				-0.9
6,115,621	+				-0.4
6,115,622	-				-0.0
6,115,649	+				-0.2
6,115,649	+				-0.2
6,115,649	+				-0.5
6,115,650	-				+0.8
6,115,650	-				+0.8
6,115,661	-				-0.3
6,115,661	-				+1.1
6,115,661	-				-0.4
6,115,692	-				+0.0
6,115,707	+				-0.2
6,115,748	+				+0.4
6,115,749	-				+0.2
6,115,749	-				+0.3
6,115,772	+				+0.8
6,115,772	+				-1.1
6,115,772	+				+0.5
6,115,772	+				-0.9
6,115,772	+				+0.8
6,115,773	-				-0.1
6,115,773	-				+0.1
6,115,773	-				+0.2
6,115,773	-				+0.8
6,115,773	-				+0.2
6,115,773	-				-2.1
6,115,773	-				+0.6
6,115,837	+				-2.0
6,115,838	-				+0.8
6,115,970	-		PP_5366	0.13	+1.0
6,116,015	+		PP_5366	0.16	-0.1
6,116,016	-		PP_5366	0.16	+0.2
6,116,016	-		PP_5366	0.16	+0.8
6,116,016	-		PP_5366	0.16	+0.1
6,116,090	-		PP_5366	0.21	-0.2
6,116,404	+		PP_5366	0.44	+0.5
6,116,499	+		PP_5366	0.50	-0.3
6,116,500	-		PP_5366	0.51	+0.8
6,116,590	+		PP_5366	0.57	-0.1
6,116,590	+		PP_5366	0.57	-0.0
6,116,590	+		PP_5366	0.57	-0.7
6,116,590	+		PP_5366	0.57	-1.0
6,116,591	-		PP_5366	0.57	-0.2
6,116,621	-		PP_5366	0.59	-0.8
6,116,622	+		PP_5366	0.59	-0.1
6,116,622	+		PP_5366	0.59	-0.0
6,116,623	-		PP_5366	0.59	+0.4
6,116,623	-		PP_5366	0.59	+1.3
6,116,623	-		PP_5366	0.59	+0.2
6,116,697	+		PP_5366	0.65	-0.1
6,116,697	+		PP_5366	0.65	-0.1
6,116,697	+		PP_5366	0.65	-1.0
6,116,698	-		PP_5366	0.65	+0.2
6,116,821	+		PP_5366	0.73	-0.2
6,116,821	+		PP_5366	0.73	+0.0
6,116,821	+		PP_5366	0.73	+0.2
6,116,821	+		PP_5366	0.73	-0.2
6,116,821	+		PP_5366	0.73	+0.1
6,116,821	+		PP_5366	0.73	-0.4
6,116,822	-		PP_5366	0.74	+0.8
6,116,845	+		PP_5366	0.75	-0.6
6,116,845	+		PP_5366	0.75	+0.4
6,116,845	+		PP_5366	0.75	-0.2
6,116,845	+		PP_5366	0.75	+0.2
6,116,845	+		PP_5366	0.75	-0.7
6,116,845	+		PP_5366	0.75	+0.8
6,116,911	+		PP_5366	0.80	-0.7
6,116,911	+		PP_5366	0.80	-0.4
6,116,911	+		PP_5366	0.80	+0.4
6,116,911	+		PP_5366	0.80	-0.8
6,116,911	+		PP_5366	0.80	+0.6
6,116,911	+		PP_5366	0.80	+0.4
6,116,912	-				+0.5
6,116,912	-		PP_5366	0.80	+0.3
6,116,912	-		PP_5366	0.80	-0.9
6,116,912	-		PP_5366	0.80	+0.4
6,117,014	+		PP_5366	0.87	-0.9
6,117,075	+				-0.3
6,117,076	-				-0.5
6,117,102	+				+0.0
6,117,102	+				-0.5
6,117,251	+				+2.1
6,117,251	+				+0.5
6,117,252	-				-0.6
6,117,252	-				+1.1
6,117,252	-				+0.3
6,117,260	-				-0.2
6,117,272	-				-0.1
6,117,287	+				+0.4
6,117,348	+				+0.1
6,117,349	-				+0.3
6,117,349	-				+0.1
6,117,562	+		PP_5367	0.55	+0.2
6,117,563	-		PP_5367	0.55	-1.5
6,117,612	+		PP_5367	0.65	+0.3
6,117,613	-		PP_5367	0.66	-0.1
6,117,716	+		PP_5367	0.87	+0.4
6,117,723	+		PP_5367	0.89	-0.2
6,117,723	+		PP_5367	0.89	+0.9
6,117,724	-		PP_5367	0.89	-0.0
6,117,724	-		PP_5367	0.89	-0.5
6,117,724	-		PP_5367	0.89	+0.7
6,117,724	-		PP_5367	0.89	-0.1
6,117,724	-		PP_5367	0.89	+0.7
6,117,747	+				-0.5
6,117,747	+				-0.6
6,117,785	-				-0.5
6,117,790	+				-0.5
6,117,790	+				+0.0
6,117,790	+				-0.3
6,117,790	+				-0.8
6,117,790	+				+0.6
6,117,791	-				+0.3
6,117,791	-				+0.3
6,117,850	+				+0.1
6,117,850	+				-0.0
6,117,850	+				-0.6
6,117,851	-				-0.1
6,117,851	-				+0.7
6,117,851	-				-0.4
6,117,851	-				+0.1
6,117,851	-				-0.8
6,117,851	-				-1.4
6,117,851	-				+0.5
6,117,908	+				-0.4
6,117,909	-				-0.6
6,117,915	+				+1.3
6,117,916	-				+0.3
6,117,916	-				-0.8
6,117,917	+				-0.5
6,117,918	-				+0.4
6,117,918	-				+0.1
6,117,932	+				+0.3
6,117,939	+				+2.1
6,117,939	+				-0.6
6,117,940	-				-0.1
6,117,958	+				-0.5
6,117,958	+				+0.2
6,117,958	+				-0.3
6,117,959	-				-0.3
6,117,959	-				-1.0
6,118,059	+		PP_5368	0.16	+0.3
6,118,059	+		PP_5368	0.16	-0.5
6,118,059	+		PP_5368	0.16	-0.1
6,118,059	+		PP_5368	0.16	-0.0
6,118,060	-		PP_5368	0.16	+1.4
6,118,077	+		PP_5368	0.18	+2.5
6,118,077	+		PP_5368	0.18	-0.8
6,118,077	+		PP_5368	0.18	+0.2
6,118,077	+		PP_5368	0.18	-0.1
6,118,077	+		PP_5368	0.18	+0.0
6,118,077	-		PP_5368	0.18	+2.1
6,118,078	-		PP_5368	0.18	-1.8
6,118,078	-		PP_5368	0.18	+0.1
6,118,111	+		PP_5368	0.21	+0.2
6,118,112	-		PP_5368	0.21	+0.9