Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF505

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF504 and GFF505 are separated by 5 nucleotidesGFF505 and GFF506 are separated by 280 nucleotides GFF504 - Putative regulator, at 233,008 to 233,610 GFF504 GFF505 - Phage-like lysozyme, at 233,616 to 233,972 GFF505 GFF506 - Putative inner membrane protein, at 234,253 to 235,842 GFF506 Position (kb) 233 234Strain fitness (log2 ratio) -2 -1 0 1 2 3at 232.620 kb on + strandat 232.620 kb on + strandat 232.621 kb on - strandat 232.621 kb on - strandat 232.625 kb on - strandat 232.632 kb on - strandat 232.766 kb on - strandat 233.238 kb on + strand, within GFF504at 233.241 kb on + strand, within GFF504at 233.511 kb on + strand, within GFF504at 233.760 kb on + strand, within GFF505at 233.760 kb on + strand, within GFF505at 233.819 kb on + strand, within GFF505at 233.853 kb on - strand, within GFF505at 233.853 kb on - strand, within GFF505at 233.853 kb on - strand, within GFF505at 233.877 kb on - strand, within GFF505at 233.924 kb on + strand, within GFF505at 234.001 kb on + strandat 234.001 kb on + strandat 234.185 kb on - strandat 234.188 kb on + strandat 234.204 kb on + strandat 234.252 kb on - strandat 234.298 kb on - strandat 234.477 kb on + strand, within GFF506at 234.477 kb on + strand, within GFF506at 234.518 kb on - strand, within GFF506at 234.590 kb on + strand, within GFF506at 234.591 kb on - strand, within GFF506at 234.695 kb on + strand, within GFF506at 234.705 kb on + strand, within GFF506at 234.745 kb on + strand, within GFF506at 234.881 kb on - strand, within GFF506at 234.881 kb on - strand, within GFF506

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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232,620 + -0.1
232,620 + -0.4
232,621 - +0.6
232,621 - -0.4
232,625 - -1.2
232,632 - +0.2
232,766 - +0.2
233,238 + GFF504 0.38 -0.7
233,241 + GFF504 0.39 -0.8
233,511 + GFF504 0.83 +1.0
233,760 + GFF505 0.40 -0.2
233,760 + GFF505 0.40 -1.3
233,819 + GFF505 0.57 -0.1
233,853 - GFF505 0.66 +2.9
233,853 - GFF505 0.66 +0.0
233,853 - GFF505 0.66 +1.0
233,877 - GFF505 0.73 -0.4
233,924 + GFF505 0.86 -0.1
234,001 + +0.5
234,001 + +0.1
234,185 - +0.1
234,188 + -0.2
234,204 + +0.3
234,252 - -0.1
234,298 - -0.4
234,477 + GFF506 0.14 +0.9
234,477 + GFF506 0.14 +0.3
234,518 - GFF506 0.17 +0.0
234,590 + GFF506 0.21 +0.3
234,591 - GFF506 0.21 -0.4
234,695 + GFF506 0.28 -0.1
234,705 + GFF506 0.28 -1.8
234,745 + GFF506 0.31 +0.2
234,881 - GFF506 0.39 +0.3
234,881 - GFF506 0.39 -0.4

Or see this region's nucleotide sequence