Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4904

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4902 and GFF4903 are separated by 323 nucleotidesGFF4903 and GFF4904 are separated by 129 nucleotidesGFF4904 and GFF4905 overlap by 4 nucleotides GFF4902 - ATP-dependent Clp protease adaptor protein ClpS, at 2,409 to 2,729 GFF4902 GFF4903 - Cold shock protein CspD, at 3,053 to 3,274 GFF4903 GFF4904 - Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-), at 3,404 to 5,350 GFF4904 GFF4905 - Macrolide-specific efflux protein MacA, at 5,347 to 6,465 GFF4905 Position (kb) 3 4 5 6Strain fitness (log2 ratio) -2 -1 0 1at 2.459 kb on - strand, within GFF4902at 2.459 kb on - strand, within GFF4902at 2.566 kb on - strand, within GFF4902at 2.572 kb on + strand, within GFF4902at 2.601 kb on - strand, within GFF4902at 2.620 kb on + strand, within GFF4902at 2.621 kb on - strand, within GFF4902at 2.634 kb on + strand, within GFF4902at 2.652 kb on - strand, within GFF4902at 2.789 kb on + strandat 2.790 kb on - strandat 2.822 kb on + strandat 2.823 kb on - strandat 2.823 kb on - strandat 2.872 kb on + strandat 2.872 kb on + strandat 3.021 kb on - strandat 3.021 kb on - strandat 3.021 kb on - strandat 3.024 kb on + strandat 3.025 kb on - strandat 3.025 kb on - strandat 3.026 kb on + strandat 3.035 kb on + strandat 3.069 kb on + strandat 3.178 kb on + strand, within GFF4903at 3.495 kb on - strandat 3.563 kb on - strandat 3.644 kb on + strand, within GFF4904at 3.645 kb on - strand, within GFF4904at 3.645 kb on - strand, within GFF4904at 3.782 kb on + strand, within GFF4904at 3.794 kb on - strand, within GFF4904at 3.796 kb on - strand, within GFF4904at 3.883 kb on + strand, within GFF4904at 3.883 kb on + strand, within GFF4904at 3.884 kb on - strand, within GFF4904at 3.944 kb on - strand, within GFF4904at 3.944 kb on - strand, within GFF4904at 3.982 kb on + strand, within GFF4904at 4.020 kb on + strand, within GFF4904at 4.020 kb on + strand, within GFF4904at 4.021 kb on - strand, within GFF4904at 4.021 kb on - strand, within GFF4904at 4.066 kb on + strand, within GFF4904at 4.066 kb on + strand, within GFF4904at 4.067 kb on - strand, within GFF4904at 4.212 kb on + strand, within GFF4904at 4.244 kb on - strand, within GFF4904at 4.259 kb on - strand, within GFF4904at 4.354 kb on - strand, within GFF4904at 4.423 kb on + strand, within GFF4904at 4.504 kb on + strand, within GFF4904at 4.505 kb on - strand, within GFF4904at 4.532 kb on + strand, within GFF4904at 4.627 kb on + strand, within GFF4904at 4.627 kb on + strand, within GFF4904at 4.631 kb on + strand, within GFF4904at 4.632 kb on - strand, within GFF4904at 4.765 kb on + strand, within GFF4904at 4.765 kb on + strand, within GFF4904at 4.766 kb on - strand, within GFF4904at 4.766 kb on - strand, within GFF4904at 5.014 kb on - strand, within GFF4904at 5.080 kb on + strand, within GFF4904at 5.195 kb on - strandat 5.311 kb on - strandat 5.314 kb on + strandat 5.314 kb on + strandat 5.315 kb on - strandat 5.494 kb on - strand, within GFF4905at 5.494 kb on - strand, within GFF4905at 5.571 kb on + strand, within GFF4905at 5.572 kb on - strand, within GFF4905at 5.573 kb on + strand, within GFF4905at 5.574 kb on - strand, within GFF4905at 5.974 kb on + strand, within GFF4905at 5.974 kb on + strand, within GFF4905at 5.974 kb on + strand, within GFF4905at 5.974 kb on + strand, within GFF4905at 5.975 kb on - strand, within GFF4905at 5.975 kb on - strand, within GFF4905at 6.054 kb on + strand, within GFF4905at 6.059 kb on - strand, within GFF4905at 6.097 kb on + strand, within GFF4905at 6.200 kb on - strand, within GFF4905at 6.214 kb on - strand, within GFF4905

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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2,459 - GFF4902 0.16 -0.1
2,459 - GFF4902 0.16 -0.0
2,566 - GFF4902 0.49 -0.4
2,572 + GFF4902 0.51 -0.4
2,601 - GFF4902 0.60 -0.1
2,620 + GFF4902 0.66 +0.0
2,621 - GFF4902 0.66 +0.0
2,634 + GFF4902 0.70 +0.3
2,652 - GFF4902 0.76 -0.1
2,789 + +1.3
2,790 - +0.6
2,822 + -0.8
2,823 - -0.4
2,823 - -0.4
2,872 + +0.2
2,872 + -0.1
3,021 - +0.9
3,021 - +0.3
3,021 - -0.3
3,024 + -0.2
3,025 - -0.4
3,025 - -0.2
3,026 + +0.3
3,035 + -0.0
3,069 + +0.1
3,178 + GFF4903 0.56 -0.7
3,495 - +0.4
3,563 - +1.2
3,644 + GFF4904 0.12 -0.1
3,645 - GFF4904 0.12 +0.5
3,645 - GFF4904 0.12 -2.3
3,782 + GFF4904 0.19 -0.0
3,794 - GFF4904 0.20 -0.3
3,796 - GFF4904 0.20 -2.0
3,883 + GFF4904 0.25 +0.3
3,883 + GFF4904 0.25 -0.1
3,884 - GFF4904 0.25 +0.1
3,944 - GFF4904 0.28 +0.1
3,944 - GFF4904 0.28 -1.3
3,982 + GFF4904 0.30 -0.6
4,020 + GFF4904 0.32 +0.1
4,020 + GFF4904 0.32 -2.2
4,021 - GFF4904 0.32 -0.2
4,021 - GFF4904 0.32 -0.4
4,066 + GFF4904 0.34 -0.3
4,066 + GFF4904 0.34 -0.4
4,067 - GFF4904 0.34 -0.0
4,212 + GFF4904 0.41 -0.9
4,244 - GFF4904 0.43 +0.4
4,259 - GFF4904 0.44 -0.1
4,354 - GFF4904 0.49 +0.3
4,423 + GFF4904 0.52 -0.1
4,504 + GFF4904 0.56 -1.4
4,505 - GFF4904 0.57 -0.6
4,532 + GFF4904 0.58 -0.5
4,627 + GFF4904 0.63 +0.5
4,627 + GFF4904 0.63 -0.8
4,631 + GFF4904 0.63 +0.4
4,632 - GFF4904 0.63 -0.1
4,765 + GFF4904 0.70 +0.1
4,765 + GFF4904 0.70 -0.4
4,766 - GFF4904 0.70 -0.1
4,766 - GFF4904 0.70 +0.7
5,014 - GFF4904 0.83 +0.1
5,080 + GFF4904 0.86 +0.2
5,195 - -0.6
5,311 - +0.2
5,314 + -1.0
5,314 + -0.2
5,315 - -0.8
5,494 - GFF4905 0.13 -0.2
5,494 - GFF4905 0.13 +0.3
5,571 + GFF4905 0.20 -0.6
5,572 - GFF4905 0.20 -0.3
5,573 + GFF4905 0.20 +0.4
5,574 - GFF4905 0.20 -0.6
5,974 + GFF4905 0.56 +0.7
5,974 + GFF4905 0.56 +0.1
5,974 + GFF4905 0.56 +0.3
5,974 + GFF4905 0.56 +0.4
5,975 - GFF4905 0.56 -0.1
5,975 - GFF4905 0.56 +0.3
6,054 + GFF4905 0.63 +0.5
6,059 - GFF4905 0.64 -0.6
6,097 + GFF4905 0.67 -0.8
6,200 - GFF4905 0.76 +0.1
6,214 - GFF4905 0.77 -0.3

Or see this region's nucleotide sequence