Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4332

Experiment: No phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4331 and GFF4332 are separated by 197 nucleotidesGFF4332 and GFF4333 are separated by 139 nucleotides GFF4331 - 2-aminoethylphosphonate ABC transporter periplasmic binding component (TC 3.A.1.9.1), at 112,350 to 113,363 GFF4331 GFF4332 - 2-aminoethylphosphonate uptake and metabolism regulator, at 113,561 to 114,280 GFF4332 GFF4333 - 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37), at 114,420 to 115,523 GFF4333 Position (kb) 113 114 115Strain fitness (log2 ratio) -2 -1 0 1at 112.794 kb on - strand, within GFF4331at 112.835 kb on + strand, within GFF4331at 112.835 kb on + strand, within GFF4331at 112.982 kb on - strand, within GFF4331at 112.982 kb on - strand, within GFF4331at 113.235 kb on + strand, within GFF4331at 113.367 kb on - strandat 113.369 kb on + strandat 113.419 kb on + strandat 113.435 kb on + strandat 113.436 kb on - strandat 113.521 kb on + strandat 113.573 kb on + strandat 113.574 kb on - strandat 113.777 kb on + strand, within GFF4332at 113.777 kb on + strand, within GFF4332at 113.806 kb on - strand, within GFF4332at 113.958 kb on - strand, within GFF4332at 113.958 kb on - strand, within GFF4332at 114.506 kb on + strandat 114.589 kb on - strand, within GFF4333at 114.621 kb on + strand, within GFF4333at 114.622 kb on - strand, within GFF4333at 114.622 kb on - strand, within GFF4333at 114.967 kb on + strand, within GFF4333at 114.968 kb on - strand, within GFF4333at 114.979 kb on - strand, within GFF4333at 115.091 kb on - strand, within GFF4333at 115.161 kb on - strand, within GFF4333

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
remove
112,794 - GFF4331 0.44 +0.9
112,835 + GFF4331 0.48 -1.4
112,835 + GFF4331 0.48 +0.0
112,982 - GFF4331 0.62 +0.1
112,982 - GFF4331 0.62 +0.7
113,235 + GFF4331 0.87 -0.3
113,367 - +0.0
113,369 + +0.0
113,419 + -0.2
113,435 + -0.4
113,436 - +0.2
113,521 + -0.4
113,573 + +0.7
113,574 - +0.2
113,777 + GFF4332 0.30 -0.1
113,777 + GFF4332 0.30 -0.1
113,806 - GFF4332 0.34 -0.1
113,958 - GFF4332 0.55 -2.0
113,958 - GFF4332 0.55 -0.7
114,506 + +0.1
114,589 - GFF4333 0.15 +0.1
114,621 + GFF4333 0.18 -0.4
114,622 - GFF4333 0.18 -0.0
114,622 - GFF4333 0.18 +0.1
114,967 + GFF4333 0.50 -0.2
114,968 - GFF4333 0.50 +1.0
114,979 - GFF4333 0.51 -0.7
115,091 - GFF4333 0.61 +0.3
115,161 - GFF4333 0.67 +0.4

Or see this region's nucleotide sequence