Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4230 and GFF4231 are separated by 4 nucleotides GFF4231 and GFF4232 overlap by 17 nucleotides GFF4232 and GFF4233 are separated by 61 nucleotides
GFF4230 - Putative exported protein precursor, at 9,917 to 11,242
GFF4230
GFF4231 - outer membrane fimbrial usher protein, at 11,247 to 13,808
GFF4231
GFF4232 - Putative fimbrial chaperone, at 13,792 to 14,553
GFF4232
GFF4233 - Fimbrial protein precursor, at 14,615 to 15,151
GFF4233
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -1
0
1
2 at 10.475 kb on - strand, within GFF4230 at 10.479 kb on + strand, within GFF4230 at 10.479 kb on + strand, within GFF4230 at 10.479 kb on + strand, within GFF4230 at 10.480 kb on - strand, within GFF4230 at 10.480 kb on - strand, within GFF4230 at 10.484 kb on - strand, within GFF4230 at 10.707 kb on + strand, within GFF4230 at 10.711 kb on + strand, within GFF4230 at 10.830 kb on + strand, within GFF4230 at 10.830 kb on + strand, within GFF4230 at 10.845 kb on - strand, within GFF4230 at 10.943 kb on + strand, within GFF4230 at 10.959 kb on + strand, within GFF4230 at 10.960 kb on - strand, within GFF4230 at 11.170 kb on + strand at 11.171 kb on - strand at 11.390 kb on - strand at 11.548 kb on + strand, within GFF4231 at 11.549 kb on - strand, within GFF4231 at 11.825 kb on + strand, within GFF4231 at 11.825 kb on + strand, within GFF4231 at 11.826 kb on - strand, within GFF4231 at 11.840 kb on - strand, within GFF4231 at 11.840 kb on - strand, within GFF4231 at 11.909 kb on + strand, within GFF4231 at 11.915 kb on + strand, within GFF4231 at 11.915 kb on + strand, within GFF4231 at 11.916 kb on - strand, within GFF4231 at 12.031 kb on + strand, within GFF4231 at 12.032 kb on - strand, within GFF4231 at 12.078 kb on - strand, within GFF4231 at 12.122 kb on + strand, within GFF4231 at 12.210 kb on + strand, within GFF4231 at 12.212 kb on + strand, within GFF4231 at 12.212 kb on + strand, within GFF4231 at 12.213 kb on - strand, within GFF4231 at 12.230 kb on + strand, within GFF4231 at 12.230 kb on + strand, within GFF4231 at 12.231 kb on - strand, within GFF4231 at 12.231 kb on - strand, within GFF4231 at 12.231 kb on - strand, within GFF4231 at 12.231 kb on - strand, within GFF4231 at 12.266 kb on + strand, within GFF4231 at 12.272 kb on - strand, within GFF4231 at 12.272 kb on - strand, within GFF4231 at 12.465 kb on + strand, within GFF4231 at 12.718 kb on + strand, within GFF4231 at 12.719 kb on - strand, within GFF4231 at 12.794 kb on - strand, within GFF4231 at 12.859 kb on + strand, within GFF4231 at 13.034 kb on + strand, within GFF4231 at 13.078 kb on + strand, within GFF4231 at 13.078 kb on + strand, within GFF4231 at 13.078 kb on + strand, within GFF4231 at 13.079 kb on - strand, within GFF4231 at 13.079 kb on - strand, within GFF4231 at 13.100 kb on + strand, within GFF4231 at 13.107 kb on - strand, within GFF4231 at 13.145 kb on + strand, within GFF4231 at 13.149 kb on - strand, within GFF4231 at 13.149 kb on - strand, within GFF4231 at 13.150 kb on + strand, within GFF4231 at 13.254 kb on + strand, within GFF4231 at 13.259 kb on - strand, within GFF4231 at 13.259 kb on - strand, within GFF4231 at 13.362 kb on - strand, within GFF4231 at 13.578 kb on - strand at 13.589 kb on + strand at 13.589 kb on + strand at 13.622 kb on - strand at 13.664 kb on + strand at 13.720 kb on + strand at 13.756 kb on - strand at 13.767 kb on + strand at 13.768 kb on - strand at 13.811 kb on + strand at 13.823 kb on - strand at 13.985 kb on - strand, within GFF4232 at 14.017 kb on - strand, within GFF4232 at 14.616 kb on + strand at 14.617 kb on - strand at 14.697 kb on + strand, within GFF4233
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 10,475 - GFF4230 0.42 -1.2 10,479 + GFF4230 0.42 -0.4 10,479 + GFF4230 0.42 -0.1 10,479 + GFF4230 0.42 -0.2 10,480 - GFF4230 0.42 -0.1 10,480 - GFF4230 0.42 +0.2 10,484 - GFF4230 0.43 -0.1 10,707 + GFF4230 0.60 -0.3 10,711 + GFF4230 0.60 +0.3 10,830 + GFF4230 0.69 -0.4 10,830 + GFF4230 0.69 -0.4 10,845 - GFF4230 0.70 +0.1 10,943 + GFF4230 0.77 +0.2 10,959 + GFF4230 0.79 -0.1 10,960 - GFF4230 0.79 -0.8 11,170 + -0.1 11,171 - -0.3 11,390 - -1.3 11,548 + GFF4231 0.12 -0.2 11,549 - GFF4231 0.12 -0.5 11,825 + GFF4231 0.23 -0.4 11,825 + GFF4231 0.23 -0.4 11,826 - GFF4231 0.23 +0.1 11,840 - GFF4231 0.23 -0.6 11,840 - GFF4231 0.23 -1.2 11,909 + GFF4231 0.26 -0.3 11,915 + GFF4231 0.26 +0.6 11,915 + GFF4231 0.26 -1.4 11,916 - GFF4231 0.26 +0.0 12,031 + GFF4231 0.31 -0.6 12,032 - GFF4231 0.31 +0.1 12,078 - GFF4231 0.32 -0.1 12,122 + GFF4231 0.34 +0.1 12,210 + GFF4231 0.38 -0.3 12,212 + GFF4231 0.38 +0.2 12,212 + GFF4231 0.38 -0.3 12,213 - GFF4231 0.38 -0.1 12,230 + GFF4231 0.38 -0.7 12,230 + GFF4231 0.38 +0.2 12,231 - GFF4231 0.38 -0.1 12,231 - GFF4231 0.38 -0.2 12,231 - GFF4231 0.38 -0.1 12,231 - GFF4231 0.38 +0.3 12,266 + GFF4231 0.40 +0.3 12,272 - GFF4231 0.40 -0.2 12,272 - GFF4231 0.40 -0.6 12,465 + GFF4231 0.48 +0.7 12,718 + GFF4231 0.57 -0.5 12,719 - GFF4231 0.57 +0.1 12,794 - GFF4231 0.60 -0.3 12,859 + GFF4231 0.63 -0.0 13,034 + GFF4231 0.70 +0.8 13,078 + GFF4231 0.71 +0.3 13,078 + GFF4231 0.71 -0.3 13,078 + GFF4231 0.71 -1.3 13,079 - GFF4231 0.72 +1.2 13,079 - GFF4231 0.72 -0.1 13,100 + GFF4231 0.72 -0.7 13,107 - GFF4231 0.73 +0.0 13,145 + GFF4231 0.74 -0.4 13,149 - GFF4231 0.74 +0.6 13,149 - GFF4231 0.74 -0.6 13,150 + GFF4231 0.74 +0.2 13,254 + GFF4231 0.78 -0.3 13,259 - GFF4231 0.79 -0.6 13,259 - GFF4231 0.79 -1.4 13,362 - GFF4231 0.83 -0.2 13,578 - -0.2 13,589 + -0.4 13,589 + +1.8 13,622 - +0.3 13,664 + -0.1 13,720 + -0.9 13,756 - +0.6 13,767 + -0.4 13,768 - +0.4 13,811 + -0.2 13,823 - -0.1 13,985 - GFF4232 0.25 +0.0 14,017 - GFF4232 0.30 -0.5 14,616 + -0.5 14,617 - -0.1 14,697 + GFF4233 0.15 +0.6
Or see this region's nucleotide sequence