Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2011 and GFF2012 are separated by 58 nucleotides GFF2012 and GFF2013 are separated by 340 nucleotides GFF2013 and GFF2014 are separated by 114 nucleotides
GFF2011 - Putative permease, at 21,955 to 23,217
GFF2011
GFF2012 - FxsA protein, at 23,276 to 23,752
GFF2012
GFF2013 - Aspartate ammonia-lyase (EC 4.3.1.1), at 24,093 to 25,529
GFF2013
GFF2014 - C4-dicarboxylate transporter DcuA, at 25,644 to 26,945
GFF2014
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1 at 23.124 kb on - strand at 23.124 kb on - strand at 23.124 kb on - strand at 23.154 kb on - strand at 23.154 kb on - strand at 23.156 kb on - strand at 23.180 kb on + strand at 23.180 kb on + strand at 23.181 kb on - strand at 23.181 kb on - strand at 23.223 kb on - strand at 23.254 kb on + strand at 23.272 kb on - strand at 23.297 kb on - strand at 23.405 kb on + strand, within GFF2012 at 23.608 kb on + strand, within GFF2012 at 23.638 kb on + strand, within GFF2012 at 23.639 kb on - strand, within GFF2012 at 23.699 kb on - strand, within GFF2012 at 23.858 kb on - strand at 23.858 kb on - strand at 23.858 kb on - strand at 23.858 kb on - strand at 23.876 kb on - strand at 23.876 kb on - strand at 23.907 kb on - strand at 23.920 kb on + strand at 24.037 kb on + strand at 24.038 kb on - strand at 24.156 kb on + strand at 24.157 kb on - strand at 24.157 kb on - strand at 24.159 kb on + strand at 24.159 kb on + strand at 24.195 kb on + strand at 24.195 kb on + strand at 24.196 kb on - strand at 24.200 kb on + strand at 24.352 kb on + strand, within GFF2013 at 24.353 kb on + strand, within GFF2013 at 24.353 kb on + strand, within GFF2013 at 24.385 kb on - strand, within GFF2013 at 24.477 kb on + strand, within GFF2013 at 24.509 kb on + strand, within GFF2013 at 24.510 kb on - strand, within GFF2013 at 24.825 kb on + strand, within GFF2013 at 24.921 kb on + strand, within GFF2013 at 24.921 kb on + strand, within GFF2013 at 24.922 kb on - strand, within GFF2013 at 24.922 kb on - strand, within GFF2013 at 24.922 kb on - strand, within GFF2013 at 25.108 kb on + strand, within GFF2013 at 25.116 kb on - strand, within GFF2013 at 25.243 kb on - strand, within GFF2013 at 25.308 kb on + strand, within GFF2013 at 25.309 kb on - strand, within GFF2013 at 25.309 kb on - strand, within GFF2013 at 25.311 kb on - strand, within GFF2013 at 25.457 kb on + strand at 25.492 kb on - strand at 25.493 kb on + strand at 25.494 kb on - strand at 25.499 kb on + strand at 25.506 kb on + strand at 25.509 kb on - strand at 25.541 kb on - strand at 25.544 kb on - strand at 25.582 kb on - strand at 25.643 kb on + strand at 25.648 kb on + strand at 25.648 kb on + strand at 25.649 kb on - strand at 25.830 kb on - strand, within GFF2014 at 25.886 kb on + strand, within GFF2014 at 25.899 kb on + strand, within GFF2014 at 25.899 kb on + strand, within GFF2014 at 26.097 kb on + strand, within GFF2014 at 26.099 kb on + strand, within GFF2014 at 26.100 kb on - strand, within GFF2014 at 26.129 kb on + strand, within GFF2014 at 26.130 kb on - strand, within GFF2014 at 26.134 kb on - strand, within GFF2014 at 26.134 kb on - strand, within GFF2014 at 26.135 kb on + strand, within GFF2014 at 26.136 kb on - strand, within GFF2014 at 26.345 kb on + strand, within GFF2014
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 23,124 - +0.3 23,124 - -0.2 23,124 - +0.0 23,154 - -0.2 23,154 - -0.3 23,156 - +0.3 23,180 + -0.4 23,180 + -0.2 23,181 - -0.0 23,181 - -2.0 23,223 - +0.8 23,254 + -0.5 23,272 - -0.0 23,297 - -0.3 23,405 + GFF2012 0.27 +0.1 23,608 + GFF2012 0.70 -1.0 23,638 + GFF2012 0.76 -0.1 23,639 - GFF2012 0.76 -0.4 23,699 - GFF2012 0.89 -1.4 23,858 - +0.2 23,858 - -0.1 23,858 - +0.3 23,858 - +0.5 23,876 - +0.1 23,876 - -0.1 23,907 - +0.0 23,920 + -0.1 24,037 + -0.2 24,038 - -0.2 24,156 + -0.3 24,157 - -0.6 24,157 - +1.3 24,159 + +0.0 24,159 + -0.3 24,195 + +0.2 24,195 + +0.1 24,196 - -0.3 24,200 + +0.3 24,352 + GFF2013 0.18 +0.3 24,353 + GFF2013 0.18 +0.1 24,353 + GFF2013 0.18 -0.0 24,385 - GFF2013 0.20 +0.1 24,477 + GFF2013 0.27 +0.1 24,509 + GFF2013 0.29 +0.2 24,510 - GFF2013 0.29 -0.0 24,825 + GFF2013 0.51 +0.2 24,921 + GFF2013 0.58 +0.3 24,921 + GFF2013 0.58 -0.1 24,922 - GFF2013 0.58 -0.0 24,922 - GFF2013 0.58 -0.6 24,922 - GFF2013 0.58 -0.1 25,108 + GFF2013 0.71 -0.4 25,116 - GFF2013 0.71 +0.3 25,243 - GFF2013 0.80 -0.1 25,308 + GFF2013 0.85 +0.9 25,309 - GFF2013 0.85 -0.1 25,309 - GFF2013 0.85 -1.0 25,311 - GFF2013 0.85 +0.6 25,457 + -0.1 25,492 - +0.2 25,493 + +0.1 25,494 - +0.6 25,499 + -0.1 25,506 + +0.1 25,509 - -1.6 25,541 - +0.6 25,544 - +0.1 25,582 - +0.5 25,643 + -0.4 25,648 + +0.1 25,648 + -1.5 25,649 - +0.5 25,830 - GFF2014 0.14 +0.0 25,886 + GFF2014 0.19 +0.7 25,899 + GFF2014 0.20 -0.1 25,899 + GFF2014 0.20 +0.3 26,097 + GFF2014 0.35 -0.0 26,099 + GFF2014 0.35 +0.1 26,100 - GFF2014 0.35 +0.2 26,129 + GFF2014 0.37 -0.1 26,130 - GFF2014 0.37 -0.4 26,134 - GFF2014 0.38 +0.1 26,134 - GFF2014 0.38 -0.1 26,135 + GFF2014 0.38 -0.7 26,136 - GFF2014 0.38 -0.1 26,345 + GFF2014 0.54 +0.4
Or see this region's nucleotide sequence