Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2012

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2011 and GFF2012 are separated by 58 nucleotidesGFF2012 and GFF2013 are separated by 340 nucleotides GFF2011 - Putative permease, at 21,955 to 23,217 GFF2011 GFF2012 - FxsA protein, at 23,276 to 23,752 GFF2012 GFF2013 - Aspartate ammonia-lyase (EC 4.3.1.1), at 24,093 to 25,529 GFF2013 Position (kb) 23 24Strain fitness (log2 ratio) -2 -1 0 1at 22.344 kb on - strand, within GFF2011at 22.359 kb on + strand, within GFF2011at 22.365 kb on - strand, within GFF2011at 22.371 kb on - strand, within GFF2011at 22.373 kb on + strand, within GFF2011at 22.374 kb on - strand, within GFF2011at 22.436 kb on + strand, within GFF2011at 22.709 kb on - strand, within GFF2011at 22.794 kb on + strand, within GFF2011at 22.831 kb on + strand, within GFF2011at 22.832 kb on - strand, within GFF2011at 22.832 kb on - strand, within GFF2011at 22.832 kb on - strand, within GFF2011at 22.874 kb on - strand, within GFF2011at 22.976 kb on - strand, within GFF2011at 23.011 kb on + strand, within GFF2011at 23.028 kb on + strand, within GFF2011at 23.038 kb on + strand, within GFF2011at 23.049 kb on + strand, within GFF2011at 23.050 kb on - strand, within GFF2011at 23.124 kb on - strandat 23.124 kb on - strandat 23.124 kb on - strandat 23.154 kb on - strandat 23.154 kb on - strandat 23.156 kb on - strandat 23.180 kb on + strandat 23.180 kb on + strandat 23.181 kb on - strandat 23.181 kb on - strandat 23.223 kb on - strandat 23.254 kb on + strandat 23.272 kb on - strandat 23.297 kb on - strandat 23.405 kb on + strand, within GFF2012at 23.608 kb on + strand, within GFF2012at 23.638 kb on + strand, within GFF2012at 23.639 kb on - strand, within GFF2012at 23.699 kb on - strand, within GFF2012at 23.858 kb on - strandat 23.858 kb on - strandat 23.858 kb on - strandat 23.858 kb on - strandat 23.876 kb on - strandat 23.876 kb on - strandat 23.907 kb on - strandat 23.920 kb on + strandat 24.037 kb on + strandat 24.038 kb on - strandat 24.156 kb on + strandat 24.157 kb on - strandat 24.157 kb on - strandat 24.159 kb on + strandat 24.159 kb on + strandat 24.195 kb on + strandat 24.195 kb on + strandat 24.196 kb on - strandat 24.200 kb on + strandat 24.352 kb on + strand, within GFF2013at 24.353 kb on + strand, within GFF2013at 24.353 kb on + strand, within GFF2013at 24.385 kb on - strand, within GFF2013at 24.477 kb on + strand, within GFF2013at 24.509 kb on + strand, within GFF2013at 24.510 kb on - strand, within GFF2013

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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22,344 - GFF2011 0.31 -0.2
22,359 + GFF2011 0.32 -0.1
22,365 - GFF2011 0.32 -0.4
22,371 - GFF2011 0.33 +0.0
22,373 + GFF2011 0.33 +0.2
22,374 - GFF2011 0.33 -1.2
22,436 + GFF2011 0.38 -0.2
22,709 - GFF2011 0.60 +0.4
22,794 + GFF2011 0.66 +0.2
22,831 + GFF2011 0.69 -0.1
22,832 - GFF2011 0.69 -0.5
22,832 - GFF2011 0.69 -0.4
22,832 - GFF2011 0.69 -0.0
22,874 - GFF2011 0.73 -1.1
22,976 - GFF2011 0.81 -1.2
23,011 + GFF2011 0.84 -0.1
23,028 + GFF2011 0.85 -0.1
23,038 + GFF2011 0.86 +1.0
23,049 + GFF2011 0.87 -0.3
23,050 - GFF2011 0.87 +0.2
23,124 - +0.3
23,124 - -0.2
23,124 - +0.0
23,154 - -0.2
23,154 - -0.3
23,156 - +0.3
23,180 + -0.4
23,180 + -0.2
23,181 - -0.0
23,181 - -2.0
23,223 - +0.8
23,254 + -0.5
23,272 - -0.0
23,297 - -0.3
23,405 + GFF2012 0.27 +0.1
23,608 + GFF2012 0.70 -1.0
23,638 + GFF2012 0.76 -0.1
23,639 - GFF2012 0.76 -0.4
23,699 - GFF2012 0.89 -1.4
23,858 - +0.2
23,858 - -0.1
23,858 - +0.3
23,858 - +0.5
23,876 - +0.1
23,876 - -0.1
23,907 - +0.0
23,920 + -0.1
24,037 + -0.2
24,038 - -0.2
24,156 + -0.3
24,157 - -0.6
24,157 - +1.3
24,159 + +0.0
24,159 + -0.3
24,195 + +0.2
24,195 + +0.1
24,196 - -0.3
24,200 + +0.3
24,352 + GFF2013 0.18 +0.3
24,353 + GFF2013 0.18 +0.1
24,353 + GFF2013 0.18 -0.0
24,385 - GFF2013 0.20 +0.1
24,477 + GFF2013 0.27 +0.1
24,509 + GFF2013 0.29 +0.2
24,510 - GFF2013 0.29 -0.0

Or see this region's nucleotide sequence