Experiment: Vanillic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0895 and PP_0896 overlap by 4 nucleotides PP_0896 and PP_0897 are separated by 115 nucleotides PP_0897 and PP_0899 are separated by 249 nucleotides
PP_0895: PP_0895 - conserved protein of unknown function, at 1,036,296 to 1,036,886
_0895
PP_0896: PP_0896 - Carbon-nitrogen hydrolase family protein, at 1,036,883 to 1,037,755
_0896
PP_0897: PP_0897 - Fumarate hydratase, class I, at 1,037,871 to 1,039,394
_0897
PP_0899: PP_0899 - putative Ferredoxin reductase, at 1,039,644 to 1,040,564
_0899
Position (kb) 1037
1038
1039
1040 Strain fitness (log2 ratio) -1
0
1 at 1036.908 kb on - strand at 1037.147 kb on + strand, within PP_0896 at 1037.147 kb on + strand, within PP_0896 at 1037.147 kb on + strand, within PP_0896 at 1037.148 kb on - strand, within PP_0896 at 1037.148 kb on - strand, within PP_0896 at 1037.148 kb on - strand, within PP_0896 at 1037.192 kb on + strand, within PP_0896 at 1037.351 kb on + strand, within PP_0896 at 1037.425 kb on + strand, within PP_0896 at 1037.425 kb on + strand, within PP_0896 at 1037.426 kb on - strand, within PP_0896 at 1037.458 kb on + strand, within PP_0896 at 1037.459 kb on - strand, within PP_0896 at 1037.459 kb on - strand, within PP_0896 at 1037.668 kb on - strand at 1037.820 kb on + strand at 1037.873 kb on - strand at 1037.873 kb on - strand at 1039.444 kb on - strand at 1039.514 kb on - strand at 1039.514 kb on - strand at 1039.514 kb on - strand at 1039.608 kb on + strand at 1039.608 kb on + strand at 1039.609 kb on - strand at 1039.738 kb on - strand, within PP_0899 at 1039.738 kb on - strand, within PP_0899 at 1039.738 kb on - strand, within PP_0899 at 1039.738 kb on - strand, within PP_0899 at 1039.897 kb on - strand, within PP_0899 at 1039.897 kb on - strand, within PP_0899 at 1040.026 kb on + strand, within PP_0899 at 1040.046 kb on + strand, within PP_0899 at 1040.047 kb on - strand, within PP_0899 at 1040.047 kb on - strand, within PP_0899 at 1040.047 kb on - strand, within PP_0899 at 1040.193 kb on + strand, within PP_0899 at 1040.193 kb on + strand, within PP_0899 at 1040.194 kb on - strand, within PP_0899 at 1040.194 kb on - strand, within PP_0899 at 1040.264 kb on + strand, within PP_0899 at 1040.314 kb on + strand, within PP_0899 at 1040.314 kb on + strand, within PP_0899 at 1040.314 kb on + strand, within PP_0899 at 1040.315 kb on - strand, within PP_0899 at 1040.315 kb on - strand, within PP_0899 at 1040.315 kb on - strand, within PP_0899 at 1040.315 kb on - strand, within PP_0899 at 1040.315 kb on - strand, within PP_0899 at 1040.315 kb on - strand, within PP_0899 at 1040.315 kb on - strand, within PP_0899
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillic Acid (C) remove 1,036,908 - +0.6 1,037,147 + PP_0896 0.30 +0.3 1,037,147 + PP_0896 0.30 +0.8 1,037,147 + PP_0896 0.30 +1.0 1,037,148 - PP_0896 0.30 +0.3 1,037,148 - PP_0896 0.30 +0.7 1,037,148 - PP_0896 0.30 +0.6 1,037,192 + PP_0896 0.35 -1.6 1,037,351 + PP_0896 0.54 +1.4 1,037,425 + PP_0896 0.62 +1.0 1,037,425 + PP_0896 0.62 +0.9 1,037,426 - PP_0896 0.62 -0.3 1,037,458 + PP_0896 0.66 +0.4 1,037,459 - PP_0896 0.66 +0.1 1,037,459 - PP_0896 0.66 -0.6 1,037,668 - -0.1 1,037,820 + -0.5 1,037,873 - -1.1 1,037,873 - -0.4 1,039,444 - +1.6 1,039,514 - -0.2 1,039,514 - -0.2 1,039,514 - -0.4 1,039,608 + -0.3 1,039,608 + +0.3 1,039,609 - +0.2 1,039,738 - PP_0899 0.10 +0.5 1,039,738 - PP_0899 0.10 +0.3 1,039,738 - PP_0899 0.10 +0.3 1,039,738 - PP_0899 0.10 -0.2 1,039,897 - PP_0899 0.27 +0.3 1,039,897 - PP_0899 0.27 +0.4 1,040,026 + PP_0899 0.41 +1.4 1,040,046 + PP_0899 0.44 +0.3 1,040,047 - PP_0899 0.44 +0.1 1,040,047 - PP_0899 0.44 -0.2 1,040,047 - PP_0899 0.44 -0.1 1,040,193 + PP_0899 0.60 -0.2 1,040,193 + PP_0899 0.60 -1.1 1,040,194 - PP_0899 0.60 -0.1 1,040,194 - PP_0899 0.60 +0.6 1,040,264 + PP_0899 0.67 +0.3 1,040,314 + PP_0899 0.73 -0.3 1,040,314 + PP_0899 0.73 -0.4 1,040,314 + PP_0899 0.73 -0.6 1,040,315 - PP_0899 0.73 +0.1 1,040,315 - PP_0899 0.73 -0.4 1,040,315 - PP_0899 0.73 +0.1 1,040,315 - PP_0899 0.73 +0.1 1,040,315 - PP_0899 0.73 -0.7 1,040,315 - PP_0899 0.73 +0.1 1,040,315 - PP_0899 0.73 -0.1
Or see this region's nucleotide sequence