Experiment: Vanillic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0652 and PP_0653 overlap by 4 nucleotides PP_0653 and PP_0654 are separated by 151 nucleotides PP_0654 and PP_0655 are separated by 53 nucleotides PP_0655 and PP_5454 overlap by 4 nucleotides PP_5454 and PP_0656 are separated by 61 nucleotides
PP_0652: PP_0652 - Gluconate transporter, at 760,154 to 761,539
_0652
PP_0653: PP_0653 - conserved protein of unknown function, at 761,536 to 761,817
_0653
PP_0654: PP_0654 - putative malate dehydrogenase, at 761,969 to 762,901
_0654
PP_0655: PP_0655 - Fimbrial protein-related protein, at 762,955 to 763,281
_0655
PP_5454: PP_5454 - conserved membrane protein of unknown function, at 763,278 to 763,637
_5454
PP_0656: PP_0656 - putative Amino acid ABC transporter, permease protein, at 763,699 to 764,520
_0656
Position (kb) 761
762
763 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 760.969 kb on - strand, within PP_0652 at 761.037 kb on - strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.091 kb on + strand, within PP_0652 at 761.092 kb on - strand, within PP_0652 at 761.145 kb on - strand, within PP_0652 at 761.398 kb on + strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.513 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.645 kb on - strand, within PP_0653 at 761.809 kb on + strand at 761.821 kb on + strand at 761.838 kb on + strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.926 kb on - strand at 761.926 kb on - strand at 761.926 kb on - strand at 761.928 kb on - strand at 761.928 kb on - strand at 761.928 kb on - strand at 761.944 kb on - strand at 761.944 kb on - strand at 762.140 kb on - strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.250 kb on + strand, within PP_0654 at 762.250 kb on + strand, within PP_0654 at 762.251 kb on - strand, within PP_0654 at 762.251 kb on - strand, within PP_0654 at 762.350 kb on + strand, within PP_0654 at 762.351 kb on - strand, within PP_0654 at 762.469 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654 at 762.601 kb on + strand, within PP_0654 at 762.710 kb on - strand, within PP_0654 at 762.710 kb on - strand, within PP_0654 at 762.744 kb on - strand, within PP_0654 at 762.899 kb on + strand at 762.900 kb on - strand at 762.900 kb on - strand at 762.964 kb on + strand at 762.964 kb on + strand at 763.003 kb on + strand, within PP_0655 at 763.004 kb on - strand, within PP_0655 at 763.016 kb on + strand, within PP_0655 at 763.016 kb on + strand, within PP_0655 at 763.016 kb on + strand, within PP_0655 at 763.017 kb on - strand, within PP_0655 at 763.017 kb on - strand, within PP_0655 at 763.017 kb on - strand, within PP_0655 at 763.017 kb on - strand, within PP_0655 at 763.017 kb on - strand, within PP_0655 at 763.081 kb on + strand, within PP_0655 at 763.081 kb on + strand, within PP_0655 at 763.081 kb on + strand, within PP_0655 at 763.082 kb on - strand at 763.082 kb on - strand, within PP_0655 at 763.108 kb on + strand, within PP_0655 at 763.176 kb on + strand, within PP_0655 at 763.177 kb on - strand, within PP_0655 at 763.177 kb on - strand, within PP_0655 at 763.177 kb on - strand, within PP_0655 at 763.177 kb on - strand, within PP_0655 at 763.300 kb on + strand at 763.345 kb on + strand, within PP_5454 at 763.345 kb on + strand, within PP_5454 at 763.346 kb on - strand, within PP_5454 at 763.346 kb on - strand, within PP_5454 at 763.364 kb on + strand, within PP_5454 at 763.364 kb on + strand, within PP_5454 at 763.365 kb on - strand, within PP_5454 at 763.365 kb on - strand, within PP_5454 at 763.365 kb on - strand, within PP_5454 at 763.369 kb on - strand, within PP_5454 at 763.369 kb on - strand, within PP_5454 at 763.378 kb on - strand, within PP_5454 at 763.380 kb on + strand, within PP_5454 at 763.380 kb on + strand, within PP_5454 at 763.380 kb on + strand, within PP_5454 at 763.381 kb on - strand, within PP_5454 at 763.381 kb on - strand, within PP_5454 at 763.393 kb on + strand, within PP_5454 at 763.403 kb on + strand, within PP_5454 at 763.403 kb on + strand, within PP_5454 at 763.404 kb on - strand, within PP_5454 at 763.404 kb on - strand, within PP_5454 at 763.494 kb on - strand, within PP_5454 at 763.494 kb on - strand, within PP_5454 at 763.494 kb on - strand, within PP_5454 at 763.630 kb on - strand at 763.630 kb on - strand at 763.709 kb on + strand at 763.709 kb on + strand at 763.709 kb on + strand at 763.709 kb on + strand at 763.710 kb on - strand at 763.775 kb on + strand at 763.775 kb on + strand at 763.775 kb on + strand at 763.776 kb on - strand at 763.776 kb on - strand at 763.776 kb on - strand at 763.808 kb on + strand, within PP_0656 at 763.814 kb on + strand, within PP_0656 at 763.814 kb on + strand, within PP_0656
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillic Acid (C) remove 760,969 - PP_0652 0.59 -0.8 761,037 - PP_0652 0.64 -0.2 761,081 + PP_0652 0.67 -0.7 761,081 + PP_0652 0.67 +0.8 761,081 + PP_0652 0.67 +0.0 761,081 + PP_0652 0.67 -1.6 761,081 + PP_0652 0.67 +0.2 761,081 + PP_0652 0.67 -0.9 761,081 + PP_0652 0.67 -1.1 761,082 - PP_0652 0.67 -1.2 761,082 - PP_0652 0.67 -0.4 761,082 - PP_0652 0.67 -0.6 761,085 + PP_0652 0.67 +0.4 761,085 + PP_0652 0.67 +0.0 761,085 + PP_0652 0.67 +0.9 761,085 + PP_0652 0.67 +0.4 761,085 + PP_0652 0.67 -0.2 761,085 + PP_0652 0.67 +0.3 761,085 + PP_0652 0.67 -0.4 761,085 + PP_0652 0.67 -0.8 761,085 + PP_0652 0.67 -0.4 761,085 + PP_0652 0.67 +0.5 761,085 + PP_0652 0.67 -0.1 761,085 + PP_0652 0.67 -0.3 761,086 - PP_0652 0.67 +0.5 761,086 - PP_0652 0.67 -0.2 761,086 - PP_0652 0.67 +0.7 761,086 - PP_0652 0.67 -0.5 761,086 - PP_0652 0.67 +0.8 761,086 - PP_0652 0.67 +0.0 761,086 - PP_0652 0.67 -0.3 761,086 - PP_0652 0.67 -0.4 761,086 - PP_0652 0.67 -0.6 761,086 - PP_0652 0.67 +0.0 761,091 + PP_0652 0.68 +0.6 761,092 - PP_0652 0.68 -0.4 761,145 - PP_0652 0.72 +0.9 761,398 + PP_0652 0.90 -0.0 761,399 - PP_0652 0.90 +0.3 761,399 - PP_0652 0.90 -1.2 761,399 - PP_0652 0.90 -0.1 761,513 + -1.1 761,516 + -0.2 761,516 + +0.7 761,516 + -0.8 761,516 + +0.6 761,516 + -0.5 761,516 + +0.6 761,516 + +0.5 761,517 - -0.9 761,517 - +0.6 761,517 - -0.8 761,517 - +1.2 761,517 - -0.9 761,522 + -0.2 761,522 + +0.4 761,522 + -0.5 761,522 + +1.1 761,522 + +0.3 761,522 + +0.1 761,522 + -0.8 761,522 + +0.3 761,522 + +0.3 761,522 + -0.1 761,522 + +0.5 761,522 + -0.3 761,522 + +0.0 761,523 - -1.4 761,523 - -0.1 761,523 - +0.6 761,523 - +0.1 761,523 - -0.1 761,523 - -1.2 761,523 - +0.2 761,523 - -0.3 761,523 - +0.3 761,523 - +0.5 761,523 - +0.0 761,523 - +0.5 761,523 - +0.4 761,523 - +0.1 761,524 + -1.8 761,524 + +0.6 761,524 + +0.8 761,524 + -0.7 761,525 - -0.6 761,525 - +0.4 761,525 - +0.1 761,525 - +0.8 761,525 - +0.5 761,525 - -0.0 761,528 + +0.2 761,528 + -1.9 761,528 + -0.3 761,528 + +0.3 761,528 + -0.1 761,528 + +0.5 761,528 + +0.2 761,529 - +0.4 761,529 - -0.4 761,529 - -0.2 761,529 - -0.7 761,529 - -0.2 761,645 - PP_0653 0.39 -1.1 761,809 + -0.3 761,821 + +0.6 761,838 + -0.0 761,916 - +0.5 761,916 - +0.2 761,916 - -0.2 761,916 - -0.9 761,916 - -0.3 761,916 - +0.4 761,926 - +0.7 761,926 - -0.0 761,926 - -1.1 761,928 - +0.3 761,928 - -0.1 761,928 - +0.3 761,944 - +0.6 761,944 - +0.1 762,140 - PP_0654 0.18 +0.8 762,243 + PP_0654 0.29 +1.3 762,243 + PP_0654 0.29 +0.6 762,243 + PP_0654 0.29 -0.4 762,243 + PP_0654 0.29 -0.1 762,243 + PP_0654 0.29 +0.2 762,244 - PP_0654 0.29 +0.5 762,244 - PP_0654 0.29 +0.6 762,244 - PP_0654 0.29 -0.4 762,244 - PP_0654 0.29 -0.2 762,244 - PP_0654 0.29 +0.1 762,244 - PP_0654 0.29 +0.2 762,244 - PP_0654 0.29 -0.0 762,250 + PP_0654 0.30 -0.0 762,250 + PP_0654 0.30 -1.6 762,251 - PP_0654 0.30 -0.7 762,251 - PP_0654 0.30 +0.0 762,350 + PP_0654 0.41 -0.3 762,351 - PP_0654 0.41 +0.7 762,469 + PP_0654 0.54 -1.5 762,524 + PP_0654 0.59 +1.4 762,524 + PP_0654 0.59 -1.3 762,524 + PP_0654 0.59 +0.7 762,601 + PP_0654 0.68 +0.1 762,710 - PP_0654 0.79 +0.5 762,710 - PP_0654 0.79 +0.0 762,744 - PP_0654 0.83 -0.5 762,899 + -0.0 762,900 - -0.4 762,900 - +0.2 762,964 + -0.2 762,964 + -0.7 763,003 + PP_0655 0.15 +0.1 763,004 - PP_0655 0.15 -0.4 763,016 + PP_0655 0.19 +0.3 763,016 + PP_0655 0.19 -0.9 763,016 + PP_0655 0.19 -0.1 763,017 - PP_0655 0.19 +0.6 763,017 - PP_0655 0.19 -0.9 763,017 - PP_0655 0.19 -0.8 763,017 - PP_0655 0.19 -0.3 763,017 - PP_0655 0.19 +1.2 763,081 + PP_0655 0.39 -1.8 763,081 + PP_0655 0.39 +0.0 763,081 + PP_0655 0.39 +1.3 763,082 - +3.0 763,082 - PP_0655 0.39 +0.1 763,108 + PP_0655 0.47 -0.1 763,176 + PP_0655 0.68 -0.6 763,177 - PP_0655 0.68 +1.4 763,177 - PP_0655 0.68 -0.1 763,177 - PP_0655 0.68 +0.6 763,177 - PP_0655 0.68 -0.2 763,300 + +0.9 763,345 + PP_5454 0.19 -0.1 763,345 + PP_5454 0.19 -0.7 763,346 - PP_5454 0.19 +0.6 763,346 - PP_5454 0.19 +0.6 763,364 + PP_5454 0.24 +0.9 763,364 + PP_5454 0.24 +1.2 763,365 - PP_5454 0.24 +0.8 763,365 - PP_5454 0.24 -1.8 763,365 - PP_5454 0.24 -0.1 763,369 - PP_5454 0.25 +0.3 763,369 - PP_5454 0.25 +0.3 763,378 - PP_5454 0.28 +0.4 763,380 + PP_5454 0.28 +0.8 763,380 + PP_5454 0.28 -0.7 763,380 + PP_5454 0.28 -0.5 763,381 - PP_5454 0.29 -1.1 763,381 - PP_5454 0.29 -0.2 763,393 + PP_5454 0.32 -0.6 763,403 + PP_5454 0.35 +0.3 763,403 + PP_5454 0.35 +0.2 763,404 - PP_5454 0.35 +0.0 763,404 - PP_5454 0.35 +0.1 763,494 - PP_5454 0.60 -0.8 763,494 - PP_5454 0.60 +1.1 763,494 - PP_5454 0.60 -0.2 763,630 - +0.5 763,630 - -0.5 763,709 + +1.0 763,709 + -0.5 763,709 + -0.3 763,709 + +0.3 763,710 - -0.8 763,775 + -0.0 763,775 + +0.7 763,775 + -0.2 763,776 - -0.2 763,776 - -1.3 763,776 - +0.1 763,808 + PP_0656 0.13 +3.2 763,814 + PP_0656 0.14 +0.2 763,814 + PP_0656 0.14 +2.0
Or see this region's nucleotide sequence