Experiment: Vanillic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0354 and PP_0355 are separated by 92 nucleotides PP_0355 and PP_0356 are separated by 46 nucleotides PP_0356 and PP_0357 are separated by 449 nucleotides
PP_0354: PP_0354 - CBS domain protein, at 430,376 to 432,313
_0354
PP_0355: PP_0355 - Response regulator, at 432,406 to 432,975
_0355
PP_0356: PP_0356 - malate synthase G, at 433,022 to 435,199
_0356
PP_0357: PP_0357 - ACT domain protein, at 435,649 to 436,167
_0357
Position (kb) 433
434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 432.105 kb on + strand, within PP_0354 at 432.105 kb on + strand, within PP_0354 at 432.105 kb on + strand, within PP_0354 at 432.106 kb on - strand, within PP_0354 at 432.106 kb on - strand, within PP_0354 at 432.159 kb on + strand at 432.160 kb on - strand at 432.160 kb on - strand at 432.344 kb on - strand at 432.345 kb on + strand at 432.345 kb on + strand at 432.346 kb on - strand at 432.346 kb on - strand at 432.346 kb on - strand at 432.346 kb on - strand at 432.347 kb on + strand at 432.347 kb on + strand at 432.347 kb on + strand at 432.347 kb on + strand at 432.348 kb on - strand at 432.348 kb on - strand at 432.348 kb on - strand at 432.351 kb on + strand at 432.351 kb on + strand at 432.351 kb on + strand at 432.351 kb on + strand at 432.352 kb on - strand at 432.352 kb on - strand at 432.354 kb on - strand at 432.354 kb on - strand at 432.355 kb on + strand at 432.356 kb on - strand at 432.357 kb on + strand at 432.357 kb on + strand at 432.357 kb on + strand at 432.423 kb on + strand at 432.423 kb on + strand at 432.423 kb on + strand at 432.424 kb on - strand at 432.424 kb on - strand at 432.424 kb on - strand at 432.429 kb on + strand at 432.429 kb on + strand at 432.430 kb on - strand at 432.430 kb on - strand at 432.430 kb on - strand at 432.491 kb on + strand, within PP_0355 at 432.491 kb on + strand, within PP_0355 at 432.491 kb on + strand, within PP_0355 at 432.492 kb on - strand, within PP_0355 at 432.724 kb on + strand, within PP_0355 at 432.725 kb on - strand, within PP_0355 at 432.733 kb on + strand, within PP_0355 at 432.734 kb on - strand, within PP_0355 at 432.744 kb on + strand, within PP_0355 at 432.745 kb on - strand, within PP_0355 at 432.759 kb on + strand, within PP_0355 at 432.993 kb on - strand at 432.993 kb on - strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.024 kb on - strand at 433.024 kb on - strand at 433.024 kb on - strand at 433.024 kb on - strand at 433.110 kb on - strand at 433.110 kb on - strand at 433.171 kb on - strand at 433.526 kb on + strand, within PP_0356 at 433.527 kb on - strand, within PP_0356 at 433.543 kb on - strand, within PP_0356 at 433.894 kb on + strand, within PP_0356 at 434.025 kb on + strand, within PP_0356 at 434.025 kb on + strand, within PP_0356 at 434.025 kb on + strand, within PP_0356 at 434.025 kb on + strand, within PP_0356 at 434.026 kb on - strand, within PP_0356 at 434.026 kb on - strand, within PP_0356 at 434.026 kb on - strand, within PP_0356 at 434.113 kb on + strand, within PP_0356 at 434.113 kb on + strand, within PP_0356 at 434.114 kb on - strand, within PP_0356 at 434.360 kb on + strand, within PP_0356 at 434.721 kb on + strand, within PP_0356 at 434.721 kb on + strand, within PP_0356 at 434.722 kb on - strand, within PP_0356 at 434.772 kb on + strand, within PP_0356 at 434.784 kb on + strand, within PP_0356 at 435.150 kb on + strand at 435.151 kb on - strand at 435.151 kb on - strand at 435.190 kb on - strand at 435.190 kb on - strand at 435.223 kb on - strand at 435.237 kb on + strand at 435.237 kb on + strand at 435.237 kb on + strand at 435.237 kb on + strand at 435.237 kb on + strand at 435.237 kb on + strand at 435.238 kb on - strand at 435.238 kb on - strand at 435.238 kb on - strand at 435.238 kb on - strand at 435.238 kb on - strand at 435.240 kb on + strand at 435.240 kb on + strand at 435.240 kb on + strand at 435.241 kb on - strand at 435.241 kb on - strand at 435.248 kb on + strand at 435.259 kb on + strand at 435.343 kb on + strand at 435.344 kb on - strand at 435.405 kb on + strand at 435.405 kb on + strand at 435.405 kb on + strand at 435.405 kb on + strand at 435.405 kb on + strand at 435.406 kb on - strand at 435.406 kb on - strand at 435.437 kb on + strand at 435.438 kb on - strand at 435.449 kb on + strand at 435.470 kb on - strand at 435.470 kb on - strand at 435.486 kb on + strand at 435.490 kb on + strand at 435.490 kb on + strand at 435.588 kb on + strand at 435.589 kb on - strand at 435.589 kb on - strand at 435.589 kb on - strand at 435.590 kb on + strand at 435.590 kb on + strand at 435.662 kb on + strand at 435.663 kb on - strand at 435.663 kb on - strand at 435.671 kb on + strand at 435.671 kb on + strand at 435.672 kb on - strand at 435.672 kb on - strand at 435.672 kb on - strand at 435.672 kb on - strand at 435.705 kb on + strand, within PP_0357 at 435.706 kb on - strand, within PP_0357 at 435.706 kb on - strand, within PP_0357 at 435.706 kb on - strand, within PP_0357 at 435.735 kb on + strand, within PP_0357 at 435.815 kb on - strand, within PP_0357 at 435.853 kb on + strand, within PP_0357 at 435.853 kb on + strand, within PP_0357 at 435.854 kb on - strand, within PP_0357 at 435.989 kb on + strand, within PP_0357 at 435.989 kb on + strand, within PP_0357
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillic Acid (C) remove 432,105 + PP_0354 0.89 +1.8 432,105 + PP_0354 0.89 +0.7 432,105 + PP_0354 0.89 +0.0 432,106 - PP_0354 0.89 +2.2 432,106 - PP_0354 0.89 +0.8 432,159 + +0.9 432,160 - -0.1 432,160 - +1.5 432,344 - +0.6 432,345 + +0.9 432,345 + +0.5 432,346 - +0.3 432,346 - -0.1 432,346 - -0.2 432,346 - -0.6 432,347 + +1.0 432,347 + +0.7 432,347 + +0.1 432,347 + +0.7 432,348 - -0.5 432,348 - -0.2 432,348 - +0.5 432,351 + +0.9 432,351 + +1.2 432,351 + +0.9 432,351 + +1.6 432,352 - -2.0 432,352 - +0.5 432,354 - -0.2 432,354 - -0.0 432,355 + +0.9 432,356 - +0.2 432,357 + +1.6 432,357 + +0.3 432,357 + +1.7 432,423 + +1.1 432,423 + +0.3 432,423 + +0.9 432,424 - -0.2 432,424 - +0.3 432,424 - -0.4 432,429 + +0.4 432,429 + +1.7 432,430 - -0.6 432,430 - -0.2 432,430 - -0.1 432,491 + PP_0355 0.15 +2.1 432,491 + PP_0355 0.15 +1.4 432,491 + PP_0355 0.15 +1.6 432,492 - PP_0355 0.15 -0.1 432,724 + PP_0355 0.56 -0.3 432,725 - PP_0355 0.56 -0.1 432,733 + PP_0355 0.57 +0.3 432,734 - PP_0355 0.58 -0.8 432,744 + PP_0355 0.59 -0.3 432,745 - PP_0355 0.59 +0.2 432,759 + PP_0355 0.62 -0.2 432,993 - +1.0 432,993 - -0.2 433,023 + +1.1 433,023 + +0.8 433,023 + +0.4 433,023 + +0.6 433,023 + -2.0 433,023 + -0.3 433,024 - +1.2 433,024 - -0.4 433,024 - -0.5 433,024 - -1.4 433,110 - +1.0 433,110 - -1.6 433,171 - -1.5 433,526 + PP_0356 0.23 -1.0 433,527 - PP_0356 0.23 +0.2 433,543 - PP_0356 0.24 -1.2 433,894 + PP_0356 0.40 -0.5 434,025 + PP_0356 0.46 +0.5 434,025 + PP_0356 0.46 +1.8 434,025 + PP_0356 0.46 -1.3 434,025 + PP_0356 0.46 -0.9 434,026 - PP_0356 0.46 -0.1 434,026 - PP_0356 0.46 -1.0 434,026 - PP_0356 0.46 +0.1 434,113 + PP_0356 0.50 -0.2 434,113 + PP_0356 0.50 +0.0 434,114 - PP_0356 0.50 -0.9 434,360 + PP_0356 0.61 -0.2 434,721 + PP_0356 0.78 -0.1 434,721 + PP_0356 0.78 +0.5 434,722 - PP_0356 0.78 +0.1 434,772 + PP_0356 0.80 -1.4 434,784 + PP_0356 0.81 +0.6 435,150 + +0.2 435,151 - +2.2 435,151 - -0.3 435,190 - +0.2 435,190 - +0.6 435,223 - -0.1 435,237 + +0.7 435,237 + +0.1 435,237 + +0.6 435,237 + -1.2 435,237 + +0.1 435,237 + +0.1 435,238 - +0.5 435,238 - +0.2 435,238 - +0.0 435,238 - +0.1 435,238 - -0.0 435,240 + +0.4 435,240 + +0.8 435,240 + -0.1 435,241 - -1.8 435,241 - +0.0 435,248 + +0.0 435,259 + +0.0 435,343 + -0.5 435,344 - +0.8 435,405 + -1.4 435,405 + +0.0 435,405 + -0.1 435,405 + +0.1 435,405 + +1.8 435,406 - -0.6 435,406 - -0.2 435,437 + -1.6 435,438 - -1.1 435,449 + +0.7 435,470 - +1.2 435,470 - -0.9 435,486 + +1.0 435,490 + +1.0 435,490 + -0.1 435,588 + +0.3 435,589 - -1.3 435,589 - -0.4 435,589 - +0.3 435,590 + -0.2 435,590 + -2.9 435,662 + +0.3 435,663 - +0.5 435,663 - +2.2 435,671 + +0.2 435,671 + -0.6 435,672 - +0.7 435,672 - +0.8 435,672 - -0.4 435,672 - +0.4 435,705 + PP_0357 0.11 -0.4 435,706 - PP_0357 0.11 -0.6 435,706 - PP_0357 0.11 +0.4 435,706 - PP_0357 0.11 +1.0 435,735 + PP_0357 0.17 +0.7 435,815 - PP_0357 0.32 +0.8 435,853 + PP_0357 0.39 -0.0 435,853 + PP_0357 0.39 +0.9 435,854 - PP_0357 0.39 +0.0 435,989 + PP_0357 0.66 +1.2 435,989 + PP_0357 0.66 +1.1
Or see this region's nucleotide sequence