Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF948

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF947 and GFF948 overlap by 1 nucleotidesGFF948 and GFF949 are separated by 136 nucleotides GFF947 - Valyl-tRNA synthetase (EC 6.1.1.9), at 120,365 to 123,220 GFF947 GFF948 - DNA polymerase III chi subunit (EC 2.7.7.7), at 123,220 to 123,663 GFF948 GFF949 - Cytosol aminopeptidase PepA (EC 3.4.11.1), at 123,800 to 125,311 GFF949 Position (kb) 123 124Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 123.363 kb on + strand, within GFF948at 123.364 kb on - strand, within GFF948at 123.364 kb on - strand, within GFF948at 123.364 kb on - strand, within GFF948at 123.644 kb on + strandat 123.665 kb on + strandat 123.666 kb on - strandat 123.689 kb on - strandat 123.854 kb on + strandat 123.930 kb on + strandat 123.930 kb on + strandat 123.930 kb on + strandat 123.934 kb on + strandat 123.940 kb on + strandat 124.218 kb on + strand, within GFF949at 124.218 kb on + strand, within GFF949at 124.552 kb on - strand, within GFF949at 124.552 kb on - strand, within GFF949

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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123,363 + GFF948 0.32 -1.6
123,364 - GFF948 0.32 -2.1
123,364 - GFF948 0.32 -3.9
123,364 - GFF948 0.32 -1.9
123,644 + -1.0
123,665 + -0.1
123,666 - -0.5
123,689 - +0.1
123,854 + -1.0
123,930 + +0.1
123,930 + +0.6
123,930 + -1.3
123,934 + -0.1
123,940 + +0.3
124,218 + GFF949 0.28 -0.4
124,218 + GFF949 0.28 +0.6
124,552 - GFF949 0.50 -0.1
124,552 - GFF949 0.50 -0.5

Or see this region's nucleotide sequence