Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF738

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF736 and GFF737 are separated by 32 nucleotidesGFF737 and GFF738 are separated by 63 nucleotidesGFF738 and GFF739 are separated by 646 nucleotides GFF736 - Electron transfer flavoprotein, alpha subunit, at 94,543 to 95,490 GFF736 GFF737 - FIG01047477: hypothetical protein, at 95,523 to 95,720 GFF737 GFF738 - Probable acyl-CoA dehydrogenase (EC 1.3.99.3), at 95,784 to 96,947 GFF738 GFF739 - Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1), at 97,594 to 99,081 GFF739 Position (kb) 95 96 97Strain fitness (log2 ratio) -1 0 1at 94.989 kb on - strand, within GFF736at 95.129 kb on + strand, within GFF736at 95.993 kb on + strand, within GFF738at 96.014 kb on + strand, within GFF738at 96.066 kb on - strand, within GFF738at 96.122 kb on + strand, within GFF738at 96.492 kb on + strand, within GFF738at 96.522 kb on - strand, within GFF738at 96.645 kb on - strand, within GFF738at 96.866 kb on - strandat 97.456 kb on - strandat 97.869 kb on + strand, within GFF739

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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94,989 - GFF736 0.47 +0.3
95,129 + GFF736 0.62 -0.5
95,993 + GFF738 0.18 -0.2
96,014 + GFF738 0.20 -1.3
96,066 - GFF738 0.24 -0.6
96,122 + GFF738 0.29 +0.2
96,492 + GFF738 0.61 -0.1
96,522 - GFF738 0.63 +0.5
96,645 - GFF738 0.74 -1.7
96,866 - -0.5
97,456 - -1.4
97,869 + GFF739 0.18 -0.1

Or see this region's nucleotide sequence