Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF571

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF570 and GFF571 are separated by 177 nucleotidesGFF571 and GFF572 overlap by 4 nucleotides GFF570 - Gluconate utilization system Gnt-I transcriptional repressor, at 299,958 to 300,911 GFF570 GFF571 - Gluconokinase (EC 2.7.1.12), at 301,089 to 301,583 GFF571 GFF572 - Low-affinity gluconate/H+ symporter GntU, at 301,580 to 302,920 GFF572 Position (kb) 301 302Strain fitness (log2 ratio) -2 -1 0 1at 300.217 kb on - strand, within GFF570at 300.495 kb on - strand, within GFF570at 300.495 kb on - strand, within GFF570at 300.495 kb on - strand, within GFF570at 300.497 kb on + strand, within GFF570at 300.498 kb on - strand, within GFF570at 300.498 kb on - strand, within GFF570at 300.516 kb on + strand, within GFF570at 300.517 kb on - strand, within GFF570at 300.552 kb on + strand, within GFF570at 300.552 kb on + strand, within GFF570at 300.553 kb on - strand, within GFF570at 300.553 kb on - strand, within GFF570at 300.641 kb on + strand, within GFF570at 300.878 kb on - strandat 300.928 kb on + strandat 300.929 kb on - strandat 301.033 kb on + strandat 301.191 kb on - strand, within GFF571at 301.191 kb on - strand, within GFF571at 301.246 kb on + strand, within GFF571at 301.247 kb on - strand, within GFF571at 301.565 kb on + strandat 301.575 kb on - strandat 301.886 kb on + strand, within GFF572at 301.887 kb on - strand, within GFF572at 302.189 kb on + strand, within GFF572

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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300,217 - GFF570 0.27 -0.1
300,495 - GFF570 0.56 -0.6
300,495 - GFF570 0.56 -0.1
300,495 - GFF570 0.56 +0.0
300,497 + GFF570 0.56 -1.0
300,498 - GFF570 0.57 +0.2
300,498 - GFF570 0.57 +0.4
300,516 + GFF570 0.58 +0.5
300,517 - GFF570 0.59 -0.1
300,552 + GFF570 0.62 +0.0
300,552 + GFF570 0.62 -0.8
300,553 - GFF570 0.62 -0.1
300,553 - GFF570 0.62 -0.2
300,641 + GFF570 0.72 -0.2
300,878 - -0.2
300,928 + -0.9
300,929 - -0.4
301,033 + +0.2
301,191 - GFF571 0.21 -0.9
301,191 - GFF571 0.21 -2.2
301,246 + GFF571 0.32 -0.9
301,247 - GFF571 0.32 -0.3
301,565 + +0.3
301,575 - +0.0
301,886 + GFF572 0.23 +0.2
301,887 - GFF572 0.23 +0.4
302,189 + GFF572 0.45 -0.3

Or see this region's nucleotide sequence