Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4596 and GFF4597 are separated by 281 nucleotides GFF4597 and GFF4598 are separated by 51 nucleotides GFF4598 and GFF4599 are separated by 133 nucleotides
GFF4596 - Ferric uptake regulation protein FUR, at 386,938 to 387,390
GFF4596
GFF4597 - Flavodoxin 1, at 387,672 to 388,301
GFF4597
GFF4598 - Uncharacterized protein ybfE, at 388,353 to 388,646
GFF4598
GFF4599 - Esterase ybfF (EC 3.1.-.-), at 388,780 to 389,550
GFF4599
Position (kb) 388
389 Strain fitness (log2 ratio) -2
-1
0
1 at 387.368 kb on - strand at 387.470 kb on - strand at 387.561 kb on + strand at 387.577 kb on - strand at 387.608 kb on - strand at 387.650 kb on + strand at 388.382 kb on + strand at 388.395 kb on + strand, within GFF4598 at 388.545 kb on + strand, within GFF4598 at 388.545 kb on + strand, within GFF4598 at 388.614 kb on + strand, within GFF4598 at 388.623 kb on - strand at 388.711 kb on + strand at 388.712 kb on - strand at 388.712 kb on - strand at 388.844 kb on - strand at 388.901 kb on - strand, within GFF4599 at 388.929 kb on - strand, within GFF4599 at 388.998 kb on + strand, within GFF4599 at 389.017 kb on + strand, within GFF4599 at 389.018 kb on - strand, within GFF4599 at 389.021 kb on - strand, within GFF4599 at 389.106 kb on + strand, within GFF4599 at 389.195 kb on + strand, within GFF4599 at 389.386 kb on + strand, within GFF4599 at 389.505 kb on + strand at 389.589 kb on + strand at 389.590 kb on - strand at 389.623 kb on + strand at 389.630 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 387,368 - -0.6 387,470 - -1.8 387,561 + -0.7 387,577 - +0.4 387,608 - -0.0 387,650 + +0.0 388,382 + -0.3 388,395 + GFF4598 0.14 -0.7 388,545 + GFF4598 0.65 -2.2 388,545 + GFF4598 0.65 -0.7 388,614 + GFF4598 0.89 -1.0 388,623 - -0.3 388,711 + -0.2 388,712 - -0.6 388,712 - -0.1 388,844 - +0.1 388,901 - GFF4599 0.16 +0.5 388,929 - GFF4599 0.19 +0.5 388,998 + GFF4599 0.28 -2.6 389,017 + GFF4599 0.31 +0.1 389,018 - GFF4599 0.31 -0.7 389,021 - GFF4599 0.31 +0.1 389,106 + GFF4599 0.42 -0.5 389,195 + GFF4599 0.54 -0.5 389,386 + GFF4599 0.79 -0.2 389,505 + +0.1 389,589 + +0.0 389,590 - +0.4 389,623 + -0.3 389,630 + +0.6
Or see this region's nucleotide sequence