Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4574 and GFF4575 overlap by 32 nucleotides GFF4575 and GFF4576 are separated by 157 nucleotides GFF4576 and GFF4577 overlap by 4 nucleotides
GFF4574 - Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE, at 360,386 to 361,975
GFF4574
GFF4575 - Magnesium and cobalt efflux protein CorC, at 361,944 to 362,822
GFF4575
GFF4576 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 362,980 to 363,453
GFF4576
GFF4577 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 363,450 to 364,496
GFF4577
Position (kb) 361
362
363 Strain fitness (log2 ratio) -1
0
1 at 362.039 kb on - strand, within GFF4575 at 362.237 kb on - strand, within GFF4575 at 362.237 kb on - strand, within GFF4575 at 362.364 kb on - strand, within GFF4575 at 362.607 kb on - strand, within GFF4575 at 362.607 kb on - strand, within GFF4575 at 362.853 kb on - strand at 362.871 kb on - strand at 362.871 kb on - strand at 362.873 kb on - strand at 362.924 kb on - strand at 363.006 kb on - strand at 363.796 kb on - strand, within GFF4577 at 363.796 kb on - strand, within GFF4577
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 362,039 - GFF4575 0.11 -1.5 362,237 - GFF4575 0.33 +1.2 362,237 - GFF4575 0.33 -0.8 362,364 - GFF4575 0.48 -0.9 362,607 - GFF4575 0.75 -0.3 362,607 - GFF4575 0.75 -0.3 362,853 - +0.3 362,871 - -0.1 362,871 - +0.2 362,873 - +0.0 362,924 - +0.3 363,006 - +0.5 363,796 - GFF4577 0.33 -0.1 363,796 - GFF4577 0.33 +0.2
Or see this region's nucleotide sequence