Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4417 and GFF4418 overlap by 8 nucleotides GFF4418 and GFF4419 are separated by 38 nucleotides GFF4419 and GFF4420 are separated by 69 nucleotides
GFF4417 - Methionine ABC transporter ATP-binding protein, at 202,193 to 203,209
GFF4417
GFF4418 - Methionine ABC transporter permease protein, at 203,202 to 203,861
GFF4418
GFF4419 - Selenophosphate-dependent tRNA 2-selenouridine synthase, at 203,900 to 204,994
GFF4419
GFF4420 - DNA-binding transcriptional activator of the allD operon, at 205,064 to 205,990
GFF4420
Position (kb) 203
204
205 Strain fitness (log2 ratio) -2
-1
0
1
2 at 203.083 kb on + strand, within GFF4417 at 203.134 kb on + strand at 203.410 kb on + strand, within GFF4418 at 203.410 kb on + strand, within GFF4418 at 203.423 kb on - strand, within GFF4418 at 203.454 kb on - strand, within GFF4418 at 203.594 kb on + strand, within GFF4418 at 203.595 kb on - strand, within GFF4418 at 203.595 kb on - strand, within GFF4418 at 203.597 kb on + strand, within GFF4418 at 203.597 kb on + strand, within GFF4418 at 203.598 kb on - strand, within GFF4418 at 203.609 kb on - strand, within GFF4418 at 203.668 kb on + strand, within GFF4418 at 203.742 kb on + strand, within GFF4418 at 203.874 kb on + strand at 203.896 kb on + strand at 203.897 kb on - strand at 203.902 kb on - strand at 203.985 kb on + strand at 203.986 kb on - strand at 204.007 kb on + strand at 204.056 kb on + strand, within GFF4419 at 204.162 kb on + strand, within GFF4419 at 204.356 kb on + strand, within GFF4419 at 204.620 kb on - strand, within GFF4419 at 204.635 kb on - strand, within GFF4419 at 204.635 kb on - strand, within GFF4419 at 204.674 kb on + strand, within GFF4419 at 204.679 kb on + strand, within GFF4419 at 204.680 kb on - strand, within GFF4419 at 204.832 kb on - strand, within GFF4419 at 204.926 kb on + strand at 204.994 kb on + strand at 205.007 kb on - strand at 205.331 kb on - strand, within GFF4420 at 205.455 kb on - strand, within GFF4420 at 205.490 kb on + strand, within GFF4420 at 205.500 kb on - strand, within GFF4420 at 205.513 kb on + strand, within GFF4420 at 205.519 kb on + strand, within GFF4420 at 205.519 kb on + strand, within GFF4420 at 205.520 kb on - strand, within GFF4420 at 205.520 kb on - strand, within GFF4420 at 205.520 kb on - strand, within GFF4420 at 205.520 kb on - strand, within GFF4420 at 205.655 kb on + strand, within GFF4420 at 205.682 kb on - strand, within GFF4420 at 205.683 kb on + strand, within GFF4420 at 205.684 kb on - strand, within GFF4420 at 205.910 kb on - strand at 205.960 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 203,083 + GFF4417 0.88 -0.7 203,134 + -0.0 203,410 + GFF4418 0.32 +0.8 203,410 + GFF4418 0.32 -0.3 203,423 - GFF4418 0.33 -1.2 203,454 - GFF4418 0.38 -0.7 203,594 + GFF4418 0.59 +0.1 203,595 - GFF4418 0.60 -0.3 203,595 - GFF4418 0.60 -0.9 203,597 + GFF4418 0.60 +0.5 203,597 + GFF4418 0.60 +2.6 203,598 - GFF4418 0.60 +0.2 203,609 - GFF4418 0.62 -2.0 203,668 + GFF4418 0.71 +0.3 203,742 + GFF4418 0.82 +1.9 203,874 + -0.7 203,896 + -0.1 203,897 - -0.3 203,902 - +0.1 203,985 + -0.3 203,986 - +0.3 204,007 + +0.1 204,056 + GFF4419 0.14 -0.2 204,162 + GFF4419 0.24 +0.6 204,356 + GFF4419 0.42 +0.1 204,620 - GFF4419 0.66 +0.5 204,635 - GFF4419 0.67 +0.8 204,635 - GFF4419 0.67 +0.1 204,674 + GFF4419 0.71 +0.0 204,679 + GFF4419 0.71 -0.2 204,680 - GFF4419 0.71 -0.2 204,832 - GFF4419 0.85 +0.4 204,926 + -0.2 204,994 + -0.1 205,007 - +0.0 205,331 - GFF4420 0.29 +0.9 205,455 - GFF4420 0.42 +1.3 205,490 + GFF4420 0.46 +0.1 205,500 - GFF4420 0.47 +0.8 205,513 + GFF4420 0.48 +0.4 205,519 + GFF4420 0.49 -1.2 205,519 + GFF4420 0.49 -0.2 205,520 - GFF4420 0.49 +0.5 205,520 - GFF4420 0.49 -0.1 205,520 - GFF4420 0.49 +0.1 205,520 - GFF4420 0.49 +1.1 205,655 + GFF4420 0.64 +0.6 205,682 - GFF4420 0.67 +0.7 205,683 + GFF4420 0.67 +0.4 205,684 - GFF4420 0.67 -0.2 205,910 - +1.0 205,960 + +0.2
Or see this region's nucleotide sequence