Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3145

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3144 and GFF3145 are separated by 27 nucleotidesGFF3145 and GFF3146 overlap by 1 nucleotidesGFF3146 and GFF3147 are separated by 24 nucleotides GFF3144 - Topoisomerase IV subunit B (EC 5.99.1.-), at 149,097 to 150,989 GFF3144 GFF3145 - Putative esterase, FIGfam005057, at 151,017 to 151,598 GFF3145 GFF3146 - '3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)' transl_table=11, at 151,598 to 152,425 GFF3146 GFF3147 - FIG074102: hypothetical protein, at 152,450 to 152,872 GFF3147 Position (kb) 151 152Strain fitness (log2 ratio) -1 0 1at 151.127 kb on - strand, within GFF3145at 151.127 kb on - strand, within GFF3145at 151.255 kb on + strand, within GFF3145at 151.256 kb on - strand, within GFF3145at 151.256 kb on - strand, within GFF3145at 151.256 kb on - strand, within GFF3145at 151.352 kb on + strand, within GFF3145at 151.715 kb on - strand, within GFF3146at 151.816 kb on + strand, within GFF3146at 152.436 kb on + strandat 152.568 kb on + strand, within GFF3147

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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151,127 - GFF3145 0.19 -1.1
151,127 - GFF3145 0.19 +0.3
151,255 + GFF3145 0.41 +0.6
151,256 - GFF3145 0.41 +0.7
151,256 - GFF3145 0.41 -0.7
151,256 - GFF3145 0.41 +0.6
151,352 + GFF3145 0.58 +0.3
151,715 - GFF3146 0.14 +0.6
151,816 + GFF3146 0.26 +0.5
152,436 + -1.1
152,568 + GFF3147 0.28 +0.3

Or see this region's nucleotide sequence