Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1035

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1033 and GFF1034 are separated by 21 nucleotidesGFF1034 and GFF1035 are separated by 91 nucleotidesGFF1035 and GFF1036 are separated by 191 nucleotidesGFF1036 and GFF1037 are separated by 75 nucleotides GFF1033 - Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-), at 216,153 to 216,449 GFF1033 GFF1034 - '5'-nucleotidase YjjG (EC 3.1.3.5)' transl_table=11, at 216,471 to 217,148 GFF1034 GFF1035 - Peptide chain release factor 3, at 217,240 to 218,829 GFF1035 GFF1036 - hypothetical protein, at 219,021 to 219,155 GFF1036 GFF1037 - Osmotically inducible protein OsmY, at 219,231 to 219,848 GFF1037 Position (kb) 217 218 219Strain fitness (log2 ratio) -2 -1 0 1at 216.248 kb on + strand, within GFF1033at 216.296 kb on - strand, within GFF1033at 216.296 kb on - strand, within GFF1033at 216.314 kb on - strand, within GFF1033at 216.345 kb on + strand, within GFF1033at 216.387 kb on + strand, within GFF1033at 216.440 kb on - strandat 216.448 kb on - strandat 216.467 kb on - strandat 216.516 kb on - strandat 216.628 kb on - strand, within GFF1034at 216.652 kb on + strand, within GFF1034at 216.728 kb on + strand, within GFF1034at 216.729 kb on - strand, within GFF1034at 216.782 kb on + strand, within GFF1034at 216.783 kb on - strand, within GFF1034at 216.783 kb on - strand, within GFF1034at 216.804 kb on - strand, within GFF1034at 216.815 kb on + strand, within GFF1034at 216.815 kb on + strand, within GFF1034at 216.818 kb on + strand, within GFF1034at 216.818 kb on + strand, within GFF1034at 216.838 kb on + strand, within GFF1034at 216.986 kb on - strand, within GFF1034at 217.140 kb on - strandat 217.294 kb on - strandat 217.377 kb on - strandat 217.441 kb on - strand, within GFF1035at 217.534 kb on - strand, within GFF1035at 217.537 kb on + strand, within GFF1035at 217.537 kb on + strand, within GFF1035at 217.612 kb on - strand, within GFF1035at 217.777 kb on - strand, within GFF1035at 217.795 kb on + strand, within GFF1035at 217.796 kb on - strand, within GFF1035at 217.796 kb on - strand, within GFF1035at 217.810 kb on + strand, within GFF1035at 217.810 kb on + strand, within GFF1035at 217.974 kb on - strand, within GFF1035at 218.040 kb on + strand, within GFF1035at 218.213 kb on - strand, within GFF1035at 218.213 kb on - strand, within GFF1035at 218.283 kb on + strand, within GFF1035at 218.626 kb on + strand, within GFF1035at 218.626 kb on + strand, within GFF1035at 218.694 kb on + strandat 218.701 kb on - strandat 218.742 kb on + strandat 218.742 kb on + strandat 218.746 kb on + strandat 218.747 kb on - strandat 218.747 kb on - strandat 218.747 kb on - strandat 219.040 kb on + strand, within GFF1036at 219.067 kb on + strand, within GFF1036at 219.073 kb on + strand, within GFF1036at 219.203 kb on + strandat 219.215 kb on - strandat 219.215 kb on - strandat 219.217 kb on - strandat 219.236 kb on + strandat 219.236 kb on + strandat 219.381 kb on - strand, within GFF1037at 219.462 kb on - strand, within GFF1037at 219.614 kb on + strand, within GFF1037

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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216,248 + GFF1033 0.32 -0.1
216,296 - GFF1033 0.48 -2.7
216,296 - GFF1033 0.48 +0.3
216,314 - GFF1033 0.54 +0.6
216,345 + GFF1033 0.65 +0.0
216,387 + GFF1033 0.79 -0.1
216,440 - -1.2
216,448 - -0.1
216,467 - +0.2
216,516 - +1.0
216,628 - GFF1034 0.23 -0.1
216,652 + GFF1034 0.27 -0.2
216,728 + GFF1034 0.38 -0.2
216,729 - GFF1034 0.38 -0.7
216,782 + GFF1034 0.46 -1.1
216,783 - GFF1034 0.46 +0.6
216,783 - GFF1034 0.46 +0.2
216,804 - GFF1034 0.49 +0.7
216,815 + GFF1034 0.51 +0.5
216,815 + GFF1034 0.51 +0.6
216,818 + GFF1034 0.51 +0.2
216,818 + GFF1034 0.51 +0.4
216,838 + GFF1034 0.54 +1.0
216,986 - GFF1034 0.76 +0.3
217,140 - -0.0
217,294 - -0.1
217,377 - -0.1
217,441 - GFF1035 0.13 +0.4
217,534 - GFF1035 0.18 +0.2
217,537 + GFF1035 0.19 +0.6
217,537 + GFF1035 0.19 +0.4
217,612 - GFF1035 0.23 -0.2
217,777 - GFF1035 0.34 -0.2
217,795 + GFF1035 0.35 +0.1
217,796 - GFF1035 0.35 -0.1
217,796 - GFF1035 0.35 +1.0
217,810 + GFF1035 0.36 -0.4
217,810 + GFF1035 0.36 +1.0
217,974 - GFF1035 0.46 -0.2
218,040 + GFF1035 0.50 +0.1
218,213 - GFF1035 0.61 +0.1
218,213 - GFF1035 0.61 -0.2
218,283 + GFF1035 0.66 +0.7
218,626 + GFF1035 0.87 +0.3
218,626 + GFF1035 0.87 +0.9
218,694 + -0.6
218,701 - +0.6
218,742 + -0.2
218,742 + +0.1
218,746 + +0.4
218,747 - -0.4
218,747 - +0.3
218,747 - +0.2
219,040 + GFF1036 0.14 +0.9
219,067 + GFF1036 0.34 -0.0
219,073 + GFF1036 0.39 +0.5
219,203 + -0.6
219,215 - +0.2
219,215 - -0.1
219,217 - -1.0
219,236 + -0.8
219,236 + +0.2
219,381 - GFF1037 0.24 -2.2
219,462 - GFF1037 0.37 +0.1
219,614 + GFF1037 0.62 -0.5

Or see this region's nucleotide sequence