Strain Fitness in Pseudomonas putida KT2440 around PP_1119

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1118 and PP_1119 are separated by 18 nucleotidesPP_1119 and PP_1120 overlap by 1 nucleotidesPP_1120 and PP_1121 are separated by 159 nucleotides PP_1118: PP_1118 - Recombinase-related protein, at 1,281,217 to 1,282,908 _1118 PP_1119: PP_1119 - conserved protein of unknown function, at 1,282,927 to 1,283,409 _1119 PP_1120: PP_1120 - conserved protein of unknown function, at 1,283,409 to 1,283,903 _1120 PP_1121: PP_1121 - OmpA family protein, at 1,284,063 to 1,284,755 _1121 Position (kb) 1282 1283 1284Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1282.055 kb on - strand, within PP_1118at 1282.058 kb on + strand, within PP_1118at 1282.058 kb on + strand, within PP_1118at 1282.058 kb on + strand, within PP_1118at 1282.091 kb on + strand, within PP_1118at 1282.091 kb on + strand, within PP_1118at 1282.092 kb on - strand, within PP_1118at 1282.092 kb on - strand, within PP_1118at 1282.138 kb on + strand, within PP_1118at 1282.138 kb on + strand, within PP_1118at 1282.138 kb on + strand, within PP_1118at 1282.138 kb on + strand, within PP_1118at 1282.138 kb on + strand, within PP_1118at 1282.138 kb on + strand, within PP_1118at 1282.138 kb on + strand, within PP_1118at 1282.138 kb on + strand, within PP_1118at 1282.139 kb on - strand, within PP_1118at 1282.139 kb on - strand, within PP_1118at 1282.139 kb on - strand, within PP_1118at 1282.139 kb on - strand, within PP_1118at 1282.139 kb on - strand, within PP_1118at 1282.151 kb on + strand, within PP_1118at 1282.152 kb on - strand, within PP_1118at 1282.246 kb on + strand, within PP_1118at 1282.247 kb on - strand, within PP_1118at 1282.247 kb on - strand, within PP_1118at 1282.247 kb on - strand, within PP_1118at 1282.247 kb on - strand, within PP_1118at 1282.247 kb on - strand, within PP_1118at 1282.303 kb on + strand, within PP_1118at 1282.303 kb on + strand, within PP_1118at 1282.303 kb on + strand, within PP_1118at 1282.303 kb on + strand, within PP_1118at 1282.304 kb on - strand, within PP_1118at 1282.304 kb on - strand, within PP_1118at 1282.304 kb on - strand, within PP_1118at 1282.352 kb on + strand, within PP_1118at 1282.352 kb on + strand, within PP_1118at 1282.352 kb on + strand, within PP_1118at 1282.352 kb on + strand, within PP_1118at 1282.352 kb on + strand, within PP_1118at 1282.352 kb on + strand, within PP_1118at 1282.352 kb on + strand, within PP_1118at 1282.352 kb on + strandat 1282.352 kb on + strand, within PP_1118at 1282.352 kb on + strand, within PP_1118at 1282.353 kb on - strand, within PP_1118at 1282.353 kb on - strand, within PP_1118at 1282.353 kb on - strand, within PP_1118at 1282.353 kb on - strand, within PP_1118at 1282.353 kb on - strand, within PP_1118at 1282.353 kb on - strand, within PP_1118at 1282.353 kb on - strand, within PP_1118at 1282.541 kb on + strand, within PP_1118at 1282.541 kb on + strand, within PP_1118at 1282.541 kb on + strand, within PP_1118at 1282.541 kb on + strand, within PP_1118at 1282.542 kb on - strand, within PP_1118at 1282.542 kb on - strand, within PP_1118at 1282.542 kb on - strand, within PP_1118at 1282.542 kb on - strand, within PP_1118at 1282.543 kb on + strand, within PP_1118at 1282.543 kb on + strand, within PP_1118at 1282.544 kb on - strand, within PP_1118at 1282.544 kb on - strand, within PP_1118at 1282.544 kb on - strand, within PP_1118at 1282.565 kb on + strand, within PP_1118at 1282.654 kb on + strand, within PP_1118at 1282.654 kb on + strand, within PP_1118at 1282.654 kb on + strand, within PP_1118at 1282.655 kb on - strand, within PP_1118at 1282.657 kb on + strand, within PP_1118at 1282.657 kb on + strand, within PP_1118at 1282.658 kb on - strand, within PP_1118at 1282.658 kb on - strand, within PP_1118at 1282.658 kb on - strand, within PP_1118at 1282.658 kb on - strand, within PP_1118at 1282.658 kb on - strand, within PP_1118at 1282.658 kb on - strand, within PP_1118at 1282.658 kb on - strand, within PP_1118at 1282.661 kb on + strand, within PP_1118at 1282.661 kb on + strand, within PP_1118at 1282.661 kb on + strand, within PP_1118at 1282.662 kb on - strand, within PP_1118at 1282.662 kb on - strand, within PP_1118at 1282.690 kb on + strand, within PP_1118at 1282.690 kb on + strand, within PP_1118at 1282.691 kb on - strand, within PP_1118at 1282.691 kb on - strand, within PP_1118at 1282.694 kb on + strand, within PP_1118at 1282.694 kb on + strand, within PP_1118at 1282.694 kb on + strand, within PP_1118at 1282.694 kb on + strand, within PP_1118at 1282.694 kb on + strand, within PP_1118at 1282.695 kb on - strand, within PP_1118at 1282.695 kb on - strand, within PP_1118at 1282.695 kb on - strand, within PP_1118at 1282.695 kb on - strand, within PP_1118at 1282.695 kb on - strand, within PP_1118at 1282.711 kb on + strand, within PP_1118at 1282.711 kb on + strand, within PP_1118at 1282.775 kb on + strandat 1282.775 kb on + strandat 1282.775 kb on + strandat 1282.776 kb on - strandat 1282.776 kb on - strandat 1282.783 kb on - strandat 1282.799 kb on - strandat 1282.843 kb on - strandat 1282.847 kb on + strandat 1282.847 kb on + strandat 1282.847 kb on + strandat 1282.848 kb on - strandat 1282.848 kb on - strandat 1282.848 kb on - strandat 1282.848 kb on - strandat 1282.848 kb on - strandat 1282.848 kb on - strandat 1282.919 kb on + strandat 1283.036 kb on + strand, within PP_1119at 1283.036 kb on + strand, within PP_1119at 1283.037 kb on - strand, within PP_1119at 1283.037 kb on - strand, within PP_1119at 1283.264 kb on + strand, within PP_1119at 1283.286 kb on - strand, within PP_1119at 1283.286 kb on - strand, within PP_1119at 1283.286 kb on - strand, within PP_1119at 1283.294 kb on + strand, within PP_1119at 1283.345 kb on + strand, within PP_1119at 1283.345 kb on + strand, within PP_1119at 1283.346 kb on - strand, within PP_1119at 1283.346 kb on - strand, within PP_1119at 1283.346 kb on - strand, within PP_1119at 1283.419 kb on + strandat 1283.420 kb on - strandat 1283.420 kb on - strandat 1283.420 kb on - strandat 1283.420 kb on - strandat 1283.420 kb on - strandat 1283.480 kb on + strand, within PP_1120at 1283.480 kb on + strand, within PP_1120at 1283.480 kb on + strand, within PP_1120at 1283.480 kb on + strand, within PP_1120at 1283.480 kb on + strand, within PP_1120at 1283.480 kb on + strandat 1283.480 kb on + strand, within PP_1120at 1283.480 kb on + strand, within PP_1120at 1283.480 kb on + strand, within PP_1120at 1283.480 kb on + strand, within PP_1120at 1283.481 kb on - strand, within PP_1120at 1283.481 kb on - strand, within PP_1120at 1283.481 kb on - strand, within PP_1120at 1283.481 kb on - strand, within PP_1120at 1283.481 kb on - strand, within PP_1120at 1283.481 kb on - strand, within PP_1120at 1283.481 kb on - strand, within PP_1120at 1283.482 kb on + strand, within PP_1120at 1283.482 kb on + strand, within PP_1120at 1283.482 kb on + strand, within PP_1120at 1283.482 kb on + strand, within PP_1120at 1283.483 kb on - strand, within PP_1120at 1283.483 kb on - strand, within PP_1120at 1283.490 kb on + strand, within PP_1120at 1283.490 kb on + strand, within PP_1120at 1283.490 kb on + strand, within PP_1120at 1283.490 kb on + strand, within PP_1120at 1283.491 kb on - strand, within PP_1120at 1283.491 kb on - strand, within PP_1120at 1283.491 kb on - strand, within PP_1120at 1283.491 kb on - strand, within PP_1120at 1283.491 kb on - strand, within PP_1120at 1283.491 kb on - strand, within PP_1120at 1283.497 kb on + strand, within PP_1120at 1283.497 kb on + strand, within PP_1120at 1283.498 kb on - strand, within PP_1120at 1283.498 kb on - strand, within PP_1120at 1283.813 kb on + strand, within PP_1120at 1283.813 kb on + strand, within PP_1120at 1283.818 kb on - strand, within PP_1120at 1283.977 kb on + strandat 1283.977 kb on + strandat 1283.977 kb on + strandat 1283.977 kb on + strandat 1283.978 kb on - strandat 1283.978 kb on - strandat 1283.978 kb on - strandat 1283.982 kb on + strandat 1283.982 kb on + strandat 1283.982 kb on + strandat 1283.983 kb on - strandat 1283.983 kb on - strandat 1284.013 kb on + strandat 1284.013 kb on + strandat 1284.013 kb on + strandat 1284.070 kb on + strandat 1284.070 kb on + strandat 1284.071 kb on - strandat 1284.071 kb on - strandat 1284.071 kb on - strandat 1284.071 kb on - strandat 1284.073 kb on + strandat 1284.073 kb on + strandat 1284.073 kb on + strandat 1284.073 kb on + strandat 1284.073 kb on + strandat 1284.074 kb on - strandat 1284.074 kb on - strandat 1284.094 kb on + strandat 1284.173 kb on - strand, within PP_1121at 1284.173 kb on - strand, within PP_1121at 1284.173 kb on - strand, within PP_1121at 1284.173 kb on - strand, within PP_1121at 1284.173 kb on - strand, within PP_1121at 1284.255 kb on + strand, within PP_1121at 1284.255 kb on + strand, within PP_1121

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,282,055 - PP_1118 0.50 +0.0
1,282,058 + PP_1118 0.50 -0.3
1,282,058 + PP_1118 0.50 -0.9
1,282,058 + PP_1118 0.50 -0.8
1,282,091 + PP_1118 0.52 +0.3
1,282,091 + PP_1118 0.52 -0.9
1,282,092 - PP_1118 0.52 -0.1
1,282,092 - PP_1118 0.52 +0.2
1,282,138 + PP_1118 0.54 -0.6
1,282,138 + PP_1118 0.54 +0.3
1,282,138 + PP_1118 0.54 -0.6
1,282,138 + PP_1118 0.54 -1.7
1,282,138 + PP_1118 0.54 -1.4
1,282,138 + PP_1118 0.54 +0.3
1,282,138 + PP_1118 0.54 -2.6
1,282,138 + PP_1118 0.54 -0.2
1,282,139 - PP_1118 0.54 -0.2
1,282,139 - PP_1118 0.54 -0.4
1,282,139 - PP_1118 0.54 -0.1
1,282,139 - PP_1118 0.54 +0.3
1,282,139 - PP_1118 0.54 +0.4
1,282,151 + PP_1118 0.55 -0.2
1,282,152 - PP_1118 0.55 -0.5
1,282,246 + PP_1118 0.61 +0.1
1,282,247 - PP_1118 0.61 +1.0
1,282,247 - PP_1118 0.61 +0.5
1,282,247 - PP_1118 0.61 -0.8
1,282,247 - PP_1118 0.61 -1.6
1,282,247 - PP_1118 0.61 -1.6
1,282,303 + PP_1118 0.64 +0.2
1,282,303 + PP_1118 0.64 -0.9
1,282,303 + PP_1118 0.64 -0.1
1,282,303 + PP_1118 0.64 -0.2
1,282,304 - PP_1118 0.64 +0.1
1,282,304 - PP_1118 0.64 -1.1
1,282,304 - PP_1118 0.64 -0.8
1,282,352 + PP_1118 0.67 +0.7
1,282,352 + PP_1118 0.67 +0.2
1,282,352 + PP_1118 0.67 +0.3
1,282,352 + PP_1118 0.67 +0.2
1,282,352 + PP_1118 0.67 +0.9
1,282,352 + PP_1118 0.67 +0.0
1,282,352 + PP_1118 0.67 -0.6
1,282,352 + +3.2
1,282,352 + PP_1118 0.67 -0.1
1,282,352 + PP_1118 0.67 +0.4
1,282,353 - PP_1118 0.67 -0.2
1,282,353 - PP_1118 0.67 -0.2
1,282,353 - PP_1118 0.67 -0.5
1,282,353 - PP_1118 0.67 +0.7
1,282,353 - PP_1118 0.67 -0.7
1,282,353 - PP_1118 0.67 +0.7
1,282,353 - PP_1118 0.67 -1.3
1,282,541 + PP_1118 0.78 +0.4
1,282,541 + PP_1118 0.78 +0.1
1,282,541 + PP_1118 0.78 +0.2
1,282,541 + PP_1118 0.78 -0.5
1,282,542 - PP_1118 0.78 +0.1
1,282,542 - PP_1118 0.78 +0.0
1,282,542 - PP_1118 0.78 -0.6
1,282,542 - PP_1118 0.78 -0.1
1,282,543 + PP_1118 0.78 +0.4
1,282,543 + PP_1118 0.78 -0.2
1,282,544 - PP_1118 0.78 +0.3
1,282,544 - PP_1118 0.78 -0.1
1,282,544 - PP_1118 0.78 +0.8
1,282,565 + PP_1118 0.80 +1.3
1,282,654 + PP_1118 0.85 +0.2
1,282,654 + PP_1118 0.85 -0.8
1,282,654 + PP_1118 0.85 -0.5
1,282,655 - PP_1118 0.85 +0.0
1,282,657 + PP_1118 0.85 -1.3
1,282,657 + PP_1118 0.85 +0.8
1,282,658 - PP_1118 0.85 -0.0
1,282,658 - PP_1118 0.85 -0.5
1,282,658 - PP_1118 0.85 -0.5
1,282,658 - PP_1118 0.85 -1.0
1,282,658 - PP_1118 0.85 -0.8
1,282,658 - PP_1118 0.85 -1.1
1,282,658 - PP_1118 0.85 +0.3
1,282,661 + PP_1118 0.85 +1.6
1,282,661 + PP_1118 0.85 +0.2
1,282,661 + PP_1118 0.85 +0.3
1,282,662 - PP_1118 0.85 +1.0
1,282,662 - PP_1118 0.85 +0.2
1,282,690 + PP_1118 0.87 -0.4
1,282,690 + PP_1118 0.87 +0.1
1,282,691 - PP_1118 0.87 -0.5
1,282,691 - PP_1118 0.87 -0.0
1,282,694 + PP_1118 0.87 -0.4
1,282,694 + PP_1118 0.87 -0.6
1,282,694 + PP_1118 0.87 -0.0
1,282,694 + PP_1118 0.87 +1.1
1,282,694 + PP_1118 0.87 -0.1
1,282,695 - PP_1118 0.87 +0.8
1,282,695 - PP_1118 0.87 +0.7
1,282,695 - PP_1118 0.87 +2.9
1,282,695 - PP_1118 0.87 +0.2
1,282,695 - PP_1118 0.87 +0.7
1,282,711 + PP_1118 0.88 +0.2
1,282,711 + PP_1118 0.88 -0.3
1,282,775 + +0.0
1,282,775 + +0.8
1,282,775 + +0.6
1,282,776 - +0.0
1,282,776 - +0.6
1,282,783 - -0.5
1,282,799 - +0.2
1,282,843 - -1.6
1,282,847 + -0.7
1,282,847 + -0.5
1,282,847 + -0.2
1,282,848 - +0.4
1,282,848 - +0.5
1,282,848 - -0.2
1,282,848 - -0.7
1,282,848 - +0.1
1,282,848 - -0.1
1,282,919 + -0.3
1,283,036 + PP_1119 0.23 +0.1
1,283,036 + PP_1119 0.23 +0.1
1,283,037 - PP_1119 0.23 -1.1
1,283,037 - PP_1119 0.23 -0.9
1,283,264 + PP_1119 0.70 +0.5
1,283,286 - PP_1119 0.74 +0.1
1,283,286 - PP_1119 0.74 +0.5
1,283,286 - PP_1119 0.74 -0.3
1,283,294 + PP_1119 0.76 -1.2
1,283,345 + PP_1119 0.87 +0.2
1,283,345 + PP_1119 0.87 +0.2
1,283,346 - PP_1119 0.87 -0.5
1,283,346 - PP_1119 0.87 +0.4
1,283,346 - PP_1119 0.87 +0.3
1,283,419 + +0.2
1,283,420 - +0.5
1,283,420 - -0.6
1,283,420 - -0.0
1,283,420 - -0.2
1,283,420 - -0.7
1,283,480 + PP_1120 0.14 -0.4
1,283,480 + PP_1120 0.14 +0.5
1,283,480 + PP_1120 0.14 +0.1
1,283,480 + PP_1120 0.14 +1.3
1,283,480 + PP_1120 0.14 +0.0
1,283,480 + -0.7
1,283,480 + PP_1120 0.14 +0.6
1,283,480 + PP_1120 0.14 -1.1
1,283,480 + PP_1120 0.14 -0.7
1,283,480 + PP_1120 0.14 -0.3
1,283,481 - PP_1120 0.15 +0.9
1,283,481 - PP_1120 0.15 +0.3
1,283,481 - PP_1120 0.15 +1.5
1,283,481 - PP_1120 0.15 +0.5
1,283,481 - PP_1120 0.15 +0.3
1,283,481 - PP_1120 0.15 -1.2
1,283,481 - PP_1120 0.15 -0.2
1,283,482 + PP_1120 0.15 -0.3
1,283,482 + PP_1120 0.15 +0.7
1,283,482 + PP_1120 0.15 +0.8
1,283,482 + PP_1120 0.15 +0.2
1,283,483 - PP_1120 0.15 +0.0
1,283,483 - PP_1120 0.15 +0.7
1,283,490 + PP_1120 0.16 +0.0
1,283,490 + PP_1120 0.16 +0.1
1,283,490 + PP_1120 0.16 +0.8
1,283,490 + PP_1120 0.16 -0.5
1,283,491 - PP_1120 0.17 -1.3
1,283,491 - PP_1120 0.17 +0.3
1,283,491 - PP_1120 0.17 +0.3
1,283,491 - PP_1120 0.17 +0.8
1,283,491 - PP_1120 0.17 -0.9
1,283,491 - PP_1120 0.17 +0.8
1,283,497 + PP_1120 0.18 -0.3
1,283,497 + PP_1120 0.18 -0.6
1,283,498 - PP_1120 0.18 +0.4
1,283,498 - PP_1120 0.18 -1.1
1,283,813 + PP_1120 0.82 +0.6
1,283,813 + PP_1120 0.82 +0.2
1,283,818 - PP_1120 0.83 -0.1
1,283,977 + -1.7
1,283,977 + -0.3
1,283,977 + -1.7
1,283,977 + +0.1
1,283,978 - +0.8
1,283,978 - -0.3
1,283,978 - +0.9
1,283,982 + +0.5
1,283,982 + +0.2
1,283,982 + +0.6
1,283,983 - +0.0
1,283,983 - -0.7
1,284,013 + +0.4
1,284,013 + +0.0
1,284,013 + +0.1
1,284,070 + -0.7
1,284,070 + +0.6
1,284,071 - -0.1
1,284,071 - +0.6
1,284,071 - +0.7
1,284,071 - +0.3
1,284,073 + -0.2
1,284,073 + +1.0
1,284,073 + -0.8
1,284,073 + -0.1
1,284,073 + -0.1
1,284,074 - -1.2
1,284,074 - -0.7
1,284,094 + -0.8
1,284,173 - PP_1121 0.16 +0.1
1,284,173 - PP_1121 0.16 +0.2
1,284,173 - PP_1121 0.16 -0.1
1,284,173 - PP_1121 0.16 -0.1
1,284,173 - PP_1121 0.16 -0.1
1,284,255 + PP_1121 0.28 +0.5
1,284,255 + PP_1121 0.28 -0.2

Or see this region's nucleotide sequence