Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF799

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF796 and GFF797 are separated by 291 nucleotidesGFF797 and GFF798 are separated by 75 nucleotidesGFF798 and GFF799 are separated by 51 nucleotidesGFF799 and GFF800 overlap by 14 nucleotides GFF796 - Phage outer membrane lytic protein Rz; Endopeptidase (EC 3.4.-.-), at 144,834 to 145,319 GFF796 GFF797 - hypothetical protein, at 145,611 to 145,802 GFF797 GFF798 - FIG01046582: hypothetical protein, at 145,878 to 146,102 GFF798 GFF799 - FIG01045807: hypothetical protein, at 146,154 to 146,645 GFF799 GFF800 - Phage terminase, large subunit, at 146,632 to 148,740 GFF800 Position (kb) 146 147Strain fitness (log2 ratio) -1 0 1at 145.293 kb on + strandat 145.354 kb on + strandat 145.422 kb on + strandat 145.454 kb on - strandat 145.531 kb on + strandat 145.545 kb on - strandat 145.594 kb on - strandat 145.598 kb on + strandat 145.599 kb on - strandat 145.788 kb on - strandat 145.861 kb on - strandat 145.879 kb on + strandat 145.913 kb on - strand, within GFF798at 145.929 kb on - strand, within GFF798at 146.290 kb on - strand, within GFF799at 146.290 kb on - strand, within GFF799at 146.503 kb on + strand, within GFF799at 146.597 kb on - strandat 146.602 kb on + strandat 146.602 kb on + strandat 146.606 kb on + strandat 146.615 kb on - strandat 146.647 kb on + strandat 146.647 kb on + strandat 146.736 kb on + strandat 146.737 kb on - strandat 146.815 kb on - strandat 146.815 kb on - strandat 146.834 kb on - strandat 147.157 kb on + strand, within GFF800at 147.231 kb on + strand, within GFF800at 147.231 kb on + strand, within GFF800at 147.231 kb on + strand, within GFF800at 147.231 kb on + strand, within GFF800at 147.232 kb on - strand, within GFF800at 147.345 kb on - strand, within GFF800at 147.347 kb on - strand, within GFF800

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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145,293 + -0.0
145,354 + +0.9
145,422 + +0.7
145,454 - +0.3
145,531 + +1.4
145,545 - +0.0
145,594 - +1.3
145,598 + +0.1
145,599 - +0.5
145,788 - +0.8
145,861 - +0.4
145,879 + +0.5
145,913 - GFF798 0.16 +0.5
145,929 - GFF798 0.23 +1.4
146,290 - GFF799 0.28 +0.7
146,290 - GFF799 0.28 +0.6
146,503 + GFF799 0.71 +0.5
146,597 - -1.6
146,602 + +1.6
146,602 + +1.4
146,606 + +1.1
146,615 - +1.5
146,647 + +0.3
146,647 + +0.9
146,736 + +0.7
146,737 - +0.2
146,815 - +0.6
146,815 - +0.6
146,834 - +0.8
147,157 + GFF800 0.25 +0.6
147,231 + GFF800 0.28 -1.3
147,231 + GFF800 0.28 +1.0
147,231 + GFF800 0.28 +1.2
147,231 + GFF800 0.28 +0.3
147,232 - GFF800 0.28 +0.7
147,345 - GFF800 0.34 +0.4
147,347 - GFF800 0.34 +1.5

Or see this region's nucleotide sequence