Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4396

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4395 and GFF4396 are separated by 152 nucleotidesGFF4396 and GFF4397 are separated by 48 nucleotides GFF4395 - Acetyl esterase (EC 3.1.1.-), at 178,087 to 179,058 GFF4395 GFF4396 - Inosine-guanosine kinase (EC 2.7.1.73), at 179,211 to 180,515 GFF4396 GFF4397 - POTASSIUM/PROTON ANTIPORTER ROSB, at 180,564 to 182,240 GFF4397 Position (kb) 179 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 178.326 kb on + strand, within GFF4395at 178.330 kb on - strand, within GFF4395at 178.518 kb on + strand, within GFF4395at 178.519 kb on - strand, within GFF4395at 178.519 kb on - strand, within GFF4395at 178.519 kb on - strand, within GFF4395at 178.629 kb on - strand, within GFF4395at 178.691 kb on + strand, within GFF4395at 178.797 kb on - strand, within GFF4395at 178.797 kb on - strand, within GFF4395at 178.797 kb on - strand, within GFF4395at 178.798 kb on + strand, within GFF4395at 178.799 kb on - strand, within GFF4395at 178.799 kb on - strand, within GFF4395at 178.843 kb on + strand, within GFF4395at 178.843 kb on + strand, within GFF4395at 178.844 kb on - strand, within GFF4395at 178.929 kb on - strand, within GFF4395at 178.932 kb on - strand, within GFF4395at 178.997 kb on - strandat 179.244 kb on + strandat 179.413 kb on + strand, within GFF4396at 179.595 kb on + strand, within GFF4396at 179.607 kb on - strand, within GFF4396at 179.644 kb on + strand, within GFF4396at 179.697 kb on - strand, within GFF4396at 179.720 kb on + strand, within GFF4396at 179.794 kb on - strand, within GFF4396at 179.808 kb on - strand, within GFF4396at 180.055 kb on + strand, within GFF4396at 180.074 kb on - strand, within GFF4396at 180.081 kb on + strand, within GFF4396at 180.081 kb on + strand, within GFF4396at 180.082 kb on - strand, within GFF4396at 180.082 kb on - strand, within GFF4396at 180.082 kb on - strand, within GFF4396at 180.083 kb on + strand, within GFF4396at 180.083 kb on + strand, within GFF4396at 180.084 kb on - strand, within GFF4396at 180.084 kb on - strand, within GFF4396at 180.146 kb on + strand, within GFF4396at 180.201 kb on - strand, within GFF4396at 180.201 kb on - strand, within GFF4396at 180.237 kb on + strand, within GFF4396at 180.327 kb on + strand, within GFF4396at 180.336 kb on - strand, within GFF4396at 180.357 kb on - strand, within GFF4396at 180.404 kb on + strandat 180.405 kb on - strandat 180.408 kb on + strandat 180.409 kb on - strandat 180.674 kb on - strandat 180.692 kb on - strandat 180.990 kb on - strand, within GFF4397at 181.109 kb on + strand, within GFF4397at 181.110 kb on - strand, within GFF4397at 181.307 kb on + strand, within GFF4397at 181.354 kb on - strand, within GFF4397at 181.421 kb on + strand, within GFF4397at 181.422 kb on - strand, within GFF4397at 181.458 kb on - strand, within GFF4397at 181.458 kb on - strand, within GFF4397

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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178,326 + GFF4395 0.25 -0.1
178,330 - GFF4395 0.25 -0.4
178,518 + GFF4395 0.44 +0.3
178,519 - GFF4395 0.44 -0.1
178,519 - GFF4395 0.44 +0.9
178,519 - GFF4395 0.44 -0.3
178,629 - GFF4395 0.56 +0.3
178,691 + GFF4395 0.62 -1.0
178,797 - GFF4395 0.73 -0.9
178,797 - GFF4395 0.73 +0.2
178,797 - GFF4395 0.73 +0.9
178,798 + GFF4395 0.73 -0.5
178,799 - GFF4395 0.73 +0.1
178,799 - GFF4395 0.73 -0.2
178,843 + GFF4395 0.78 -1.1
178,843 + GFF4395 0.78 +0.0
178,844 - GFF4395 0.78 +2.1
178,929 - GFF4395 0.87 -2.5
178,932 - GFF4395 0.87 -0.9
178,997 - -0.8
179,244 + -0.5
179,413 + GFF4396 0.15 +0.6
179,595 + GFF4396 0.29 -1.5
179,607 - GFF4396 0.30 -0.2
179,644 + GFF4396 0.33 -0.2
179,697 - GFF4396 0.37 -0.2
179,720 + GFF4396 0.39 +0.3
179,794 - GFF4396 0.45 +0.1
179,808 - GFF4396 0.46 +0.1
180,055 + GFF4396 0.65 +0.5
180,074 - GFF4396 0.66 -0.1
180,081 + GFF4396 0.67 -0.5
180,081 + GFF4396 0.67 -1.4
180,082 - GFF4396 0.67 -0.8
180,082 - GFF4396 0.67 -1.1
180,082 - GFF4396 0.67 -1.0
180,083 + GFF4396 0.67 -0.3
180,083 + GFF4396 0.67 -0.1
180,084 - GFF4396 0.67 +0.2
180,084 - GFF4396 0.67 +0.6
180,146 + GFF4396 0.72 -0.2
180,201 - GFF4396 0.76 -0.6
180,201 - GFF4396 0.76 -0.7
180,237 + GFF4396 0.79 -0.9
180,327 + GFF4396 0.86 +0.4
180,336 - GFF4396 0.86 +0.5
180,357 - GFF4396 0.88 -0.9
180,404 + -0.5
180,405 - +0.6
180,408 + +0.4
180,409 - +0.0
180,674 - +0.4
180,692 - -0.1
180,990 - GFF4397 0.25 -0.1
181,109 + GFF4397 0.32 +0.1
181,110 - GFF4397 0.33 -0.2
181,307 + GFF4397 0.44 -0.3
181,354 - GFF4397 0.47 +0.1
181,421 + GFF4397 0.51 -0.3
181,422 - GFF4397 0.51 +0.4
181,458 - GFF4397 0.53 -1.4
181,458 - GFF4397 0.53 -0.1

Or see this region's nucleotide sequence