Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2448

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2447 and GFF2448 are separated by 137 nucleotidesGFF2448 and GFF2449 are separated by 40 nucleotides GFF2447 - Serine hydroxymethyltransferase (EC 2.1.2.1), at 62,166 to 63,419 GFF2447 GFF2448 - hypothetical protein, at 63,557 to 63,703 GFF2448 GFF2449 - Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17), at 63,744 to 64,934 GFF2449 Position (kb) 63 64Strain fitness (log2 ratio) -1 0 1at 63.257 kb on - strand, within GFF2447at 63.492 kb on - strandat 63.492 kb on - strandat 63.640 kb on + strand, within GFF2448at 63.649 kb on - strand, within GFF2448at 63.743 kb on + strandat 63.743 kb on + strandat 63.773 kb on - strandat 63.837 kb on - strandat 63.923 kb on + strand, within GFF2449at 63.923 kb on + strand, within GFF2449at 64.013 kb on + strand, within GFF2449at 64.121 kb on - strand, within GFF2449at 64.306 kb on - strand, within GFF2449at 64.682 kb on + strand, within GFF2449

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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63,257 - GFF2447 0.87 -0.2
63,492 - +0.3
63,492 - -0.3
63,640 + GFF2448 0.56 +0.4
63,649 - GFF2448 0.63 +0.1
63,743 + +0.5
63,743 + +1.7
63,773 - +0.4
63,837 - +0.2
63,923 + GFF2449 0.15 -0.9
63,923 + GFF2449 0.15 -0.4
64,013 + GFF2449 0.23 +0.0
64,121 - GFF2449 0.32 +0.4
64,306 - GFF2449 0.47 -0.1
64,682 + GFF2449 0.79 +0.1

Or see this region's nucleotide sequence