Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF190

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF188 and GFF189 overlap by 1 nucleotidesGFF189 and GFF190 overlap by 4 nucleotidesGFF190 and GFF191 are separated by 2 nucleotidesGFF191 and GFF192 are separated by 10 nucleotides GFF188 - Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8), at 183,334 to 184,620 GFF188 GFF189 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 184,620 to 185,609 GFF189 GFF190 - SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182), at 185,606 to 186,427 GFF190 GFF191 - ApaG protein, at 186,430 to 186,807 GFF191 GFF192 - 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11, at 186,818 to 187,666 GFF192 Position (kb) 185 186 187Strain fitness (log2 ratio) -3 -2 -1 0 1at 184.614 kb on + strandat 184.906 kb on - strand, within GFF189at 184.906 kb on - strand, within GFF189at 184.906 kb on - strand, within GFF189at 185.178 kb on - strand, within GFF189at 185.287 kb on + strand, within GFF189at 185.287 kb on + strand, within GFF189at 185.288 kb on - strand, within GFF189at 185.350 kb on + strand, within GFF189at 185.361 kb on - strand, within GFF189at 185.383 kb on + strand, within GFF189at 185.438 kb on - strand, within GFF189at 185.867 kb on + strand, within GFF190at 185.957 kb on - strand, within GFF190at 185.990 kb on + strand, within GFF190at 185.991 kb on - strand, within GFF190at 185.992 kb on + strand, within GFF190at 186.020 kb on - strand, within GFF190at 186.074 kb on + strand, within GFF190at 186.074 kb on + strand, within GFF190at 186.105 kb on - strand, within GFF190at 186.392 kb on + strandat 186.585 kb on + strand, within GFF191at 186.811 kb on + strandat 186.855 kb on - strandat 186.892 kb on + strandat 186.892 kb on + strandat 186.963 kb on + strand, within GFF192at 186.964 kb on - strand, within GFF192at 186.969 kb on - strand, within GFF192at 186.989 kb on - strand, within GFF192at 187.064 kb on - strand, within GFF192at 187.183 kb on + strand, within GFF192at 187.336 kb on - strand, within GFF192at 187.346 kb on - strand, within GFF192at 187.346 kb on - strand, within GFF192at 187.348 kb on + strand, within GFF192at 187.400 kb on + strand, within GFF192

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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184,614 + -0.4
184,906 - GFF189 0.29 -0.6
184,906 - GFF189 0.29 -0.6
184,906 - GFF189 0.29 +0.2
185,178 - GFF189 0.56 +0.1
185,287 + GFF189 0.67 -0.1
185,287 + GFF189 0.67 -0.1
185,288 - GFF189 0.67 -0.9
185,350 + GFF189 0.74 -0.2
185,361 - GFF189 0.75 -0.5
185,383 + GFF189 0.77 -0.4
185,438 - GFF189 0.83 -1.7
185,867 + GFF190 0.32 -2.2
185,957 - GFF190 0.43 -0.7
185,990 + GFF190 0.47 -0.5
185,991 - GFF190 0.47 -1.3
185,992 + GFF190 0.47 -1.5
186,020 - GFF190 0.50 -0.6
186,074 + GFF190 0.57 +0.1
186,074 + GFF190 0.57 -0.6
186,105 - GFF190 0.61 +0.1
186,392 + +0.5
186,585 + GFF191 0.41 +0.2
186,811 + -0.7
186,855 - -1.8
186,892 + -1.7
186,892 + -2.1
186,963 + GFF192 0.17 -1.1
186,964 - GFF192 0.17 -1.2
186,969 - GFF192 0.18 -1.8
186,989 - GFF192 0.20 -0.5
187,064 - GFF192 0.29 -2.4
187,183 + GFF192 0.43 -1.5
187,336 - GFF192 0.61 -2.9
187,346 - GFF192 0.62 -2.4
187,346 - GFF192 0.62 -2.3
187,348 + GFF192 0.62 -2.7
187,400 + GFF192 0.69 -1.2

Or see this region's nucleotide sequence