Experiment: benzoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4192 and PP_4193 overlap by 7 nucleotides PP_4193 and PP_4194 are separated by 352 nucleotides PP_4194 and PP_4195 are separated by 752 nucleotides
PP_4192: PP_4192 - succinate dehydrogenase hydrophobic membrane anchor subunit, at 4,738,373 to 4,738,741
_4192
PP_4193: PP_4193 - succinate dehydrogenase membrane b-556 subunit, at 4,738,735 to 4,739,121
_4193
PP_4194: PP_4194 - citrate synthase, at 4,739,474 to 4,740,763
_4194
PP_4195: PP_4195 - putative oxidoreductase, at 4,741,516 to 4,741,770
_4195
Position (kb)
4739
4740
4741 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4739.167 kb on - strand at 4739.250 kb on - strand at 4739.258 kb on - strand at 4739.294 kb on - strand at 4739.323 kb on + strand at 4739.410 kb on + strand at 4739.410 kb on + strand at 4739.460 kb on + strand at 4740.762 kb on - strand at 4740.762 kb on - strand at 4740.967 kb on + strand at 4740.994 kb on - strand at 4740.994 kb on - strand at 4741.084 kb on - strand at 4741.084 kb on - strand at 4741.084 kb on - strand at 4741.084 kb on - strand at 4741.142 kb on - strand at 4741.184 kb on - strand at 4741.195 kb on + strand at 4741.196 kb on - strand at 4741.197 kb on + strand at 4741.197 kb on + strand at 4741.197 kb on + strand at 4741.197 kb on + strand at 4741.198 kb on - strand at 4741.198 kb on - strand at 4741.198 kb on - strand at 4741.198 kb on - strand at 4741.198 kb on - strand at 4741.343 kb on + strand at 4741.344 kb on - strand at 4741.464 kb on + strand at 4741.465 kb on - strand at 4741.465 kb on - strand at 4741.465 kb on - strand at 4741.465 kb on - strand at 4741.465 kb on - strand at 4741.489 kb on + strand at 4741.489 kb on + strand at 4741.489 kb on + strand at 4741.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic (C) remove 4,739,167 - +0.4 4,739,250 - -0.6 4,739,258 - +0.2 4,739,294 - -0.5 4,739,323 + -0.8 4,739,410 + +0.4 4,739,410 + +0.6 4,739,460 + -0.2 4,740,762 - -1.7 4,740,762 - -3.3 4,740,967 + -0.1 4,740,994 - -0.2 4,740,994 - -0.3 4,741,084 - +0.1 4,741,084 - +0.1 4,741,084 - -0.9 4,741,084 - -0.5 4,741,142 - +0.1 4,741,184 - -0.2 4,741,195 + +0.6 4,741,196 - -1.1 4,741,197 + -1.6 4,741,197 + +1.4 4,741,197 + -0.6 4,741,197 + -0.4 4,741,198 - +1.0 4,741,198 - -1.1 4,741,198 - -0.8 4,741,198 - +1.0 4,741,198 - -0.3 4,741,343 + +0.6 4,741,344 - +0.2 4,741,464 + +0.3 4,741,465 - -1.0 4,741,465 - +0.2 4,741,465 - +1.0 4,741,465 - -1.6 4,741,465 - -1.2 4,741,489 + +0.0 4,741,489 + +0.5 4,741,489 + -1.6 4,741,490 - -0.5
Or see this region's nucleotide sequence