Strain Fitness in Pseudomonas putida KT2440 around PP_4194

Experiment: benzoic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4192 and PP_4193 overlap by 7 nucleotidesPP_4193 and PP_4194 are separated by 352 nucleotidesPP_4194 and PP_4195 are separated by 752 nucleotides PP_4192: PP_4192 - succinate dehydrogenase hydrophobic membrane anchor subunit, at 4,738,373 to 4,738,741 _4192 PP_4193: PP_4193 - succinate dehydrogenase membrane b-556 subunit, at 4,738,735 to 4,739,121 _4193 PP_4194: PP_4194 - citrate synthase, at 4,739,474 to 4,740,763 _4194 PP_4195: PP_4195 - putative oxidoreductase, at 4,741,516 to 4,741,770 _4195 Position (kb) 4739 4740 4741Strain fitness (log2 ratio) -3 -2 -1 0 1at 4739.167 kb on - strandat 4739.250 kb on - strandat 4739.258 kb on - strandat 4739.294 kb on - strandat 4739.323 kb on + strandat 4739.410 kb on + strandat 4739.410 kb on + strandat 4739.460 kb on + strandat 4740.762 kb on - strandat 4740.762 kb on - strandat 4740.967 kb on + strandat 4740.994 kb on - strandat 4740.994 kb on - strandat 4741.084 kb on - strandat 4741.084 kb on - strandat 4741.084 kb on - strandat 4741.084 kb on - strandat 4741.142 kb on - strandat 4741.184 kb on - strandat 4741.195 kb on + strandat 4741.196 kb on - strandat 4741.197 kb on + strandat 4741.197 kb on + strandat 4741.197 kb on + strandat 4741.197 kb on + strandat 4741.198 kb on - strandat 4741.198 kb on - strandat 4741.198 kb on - strandat 4741.198 kb on - strandat 4741.198 kb on - strandat 4741.343 kb on + strandat 4741.344 kb on - strandat 4741.464 kb on + strandat 4741.465 kb on - strandat 4741.465 kb on - strandat 4741.465 kb on - strandat 4741.465 kb on - strandat 4741.465 kb on - strandat 4741.489 kb on + strandat 4741.489 kb on + strandat 4741.489 kb on + strandat 4741.490 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction benzoic (C)
remove
4,739,167 - +0.4
4,739,250 - -0.6
4,739,258 - +0.2
4,739,294 - -0.5
4,739,323 + -0.8
4,739,410 + +0.4
4,739,410 + +0.6
4,739,460 + -0.2
4,740,762 - -1.7
4,740,762 - -3.3
4,740,967 + -0.1
4,740,994 - -0.2
4,740,994 - -0.3
4,741,084 - +0.1
4,741,084 - +0.1
4,741,084 - -0.9
4,741,084 - -0.5
4,741,142 - +0.1
4,741,184 - -0.2
4,741,195 + +0.6
4,741,196 - -1.1
4,741,197 + -1.6
4,741,197 + +1.4
4,741,197 + -0.6
4,741,197 + -0.4
4,741,198 - +1.0
4,741,198 - -1.1
4,741,198 - -0.8
4,741,198 - +1.0
4,741,198 - -0.3
4,741,343 + +0.6
4,741,344 - +0.2
4,741,464 + +0.3
4,741,465 - -1.0
4,741,465 - +0.2
4,741,465 - +1.0
4,741,465 - -1.6
4,741,465 - -1.2
4,741,489 + +0.0
4,741,489 + +0.5
4,741,489 + -1.6
4,741,490 - -0.5

Or see this region's nucleotide sequence