Experiment: benzoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4189 and PP_4190 are separated by 246 nucleotides PP_4190 and PP_4191 are separated by 11 nucleotides PP_4191 and PP_4192 are separated by 3 nucleotides PP_4192 and PP_4193 overlap by 7 nucleotides
PP_4189: PP_4189 - 2-oxoglutarate decarboxylase, thiamine-requiring E1 subunit, at 4,732,803 to 4,735,634
_4189
PP_4190: PP_4190 - succinate dehydrogenase iron-sulfur subunit, at 4,735,881 to 4,736,585
_4190
PP_4191: PP_4191 - succinate dehydrogenase flavoprotein subunit, at 4,736,597 to 4,738,369
_4191
PP_4192: PP_4192 - succinate dehydrogenase hydrophobic membrane anchor subunit, at 4,738,373 to 4,738,741
_4192
PP_4193: PP_4193 - succinate dehydrogenase membrane b-556 subunit, at 4,738,735 to 4,739,121
_4193
Position (kb) 4736
4737
4738
4739 Strain fitness (log2 ratio) -1
0
1 at 4735.783 kb on - strand at 4735.787 kb on - strand at 4735.859 kb on - strand at 4735.868 kb on - strand at 4735.868 kb on - strand at 4735.880 kb on - strand at 4739.167 kb on - strand at 4739.250 kb on - strand at 4739.258 kb on - strand at 4739.294 kb on - strand at 4739.323 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic (C) remove 4,735,783 - +0.1 4,735,787 - -1.1 4,735,859 - -1.2 4,735,868 - +0.4 4,735,868 - -0.2 4,735,880 - +0.4 4,739,167 - +0.4 4,739,250 - -0.6 4,739,258 - +0.2 4,739,294 - -0.5 4,739,323 + -0.8
Or see this region's nucleotide sequence