Experiment: benzoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0793 and PP_0794 are separated by 0 nucleotides PP_0794 and PP_0795 overlap by 4 nucleotides PP_0795 and PP_0796 are separated by 147 nucleotides PP_0796 and PP_0797 are separated by 72 nucleotides
PP_0793: PP_0793 - Phosphotransferase system, fructose-specific EI/HPr/EIIA components, at 909,493 to 912,345
_0793
PP_0794: PP_0794 - 1-phosphofructokinase monomer, at 912,346 to 913,293
_0794
PP_0795: PP_0795 - fructose PTS permease - IIBC component, at 913,290 to 915,032
_0795
PP_0796: PP_0796 - conserved protein of unknown function, at 915,180 to 915,467
_0796
PP_0797: PP_0797 - conserved protein of unknown function, at 915,540 to 916,079
_0797
Position (kb) 913
914
915
916 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 912.387 kb on + strand at 912.510 kb on - strand, within PP_0794 at 912.621 kb on + strand, within PP_0794 at 912.622 kb on - strand, within PP_0794 at 912.622 kb on - strand, within PP_0794 at 912.833 kb on + strand, within PP_0794 at 912.833 kb on + strand, within PP_0794 at 912.834 kb on - strand, within PP_0794 at 912.904 kb on - strand, within PP_0794 at 913.304 kb on - strand at 913.304 kb on - strand at 913.339 kb on + strand at 913.340 kb on - strand at 913.340 kb on - strand at 913.409 kb on + strand at 913.410 kb on - strand at 913.410 kb on - strand at 913.628 kb on + strand, within PP_0795 at 913.679 kb on - strand, within PP_0795 at 913.685 kb on + strand, within PP_0795 at 913.685 kb on + strand, within PP_0795 at 913.686 kb on - strand, within PP_0795 at 913.840 kb on + strand, within PP_0795 at 913.868 kb on + strand, within PP_0795 at 913.869 kb on - strand, within PP_0795 at 913.869 kb on - strand, within PP_0795 at 913.869 kb on - strand, within PP_0795 at 913.872 kb on + strand, within PP_0795 at 913.872 kb on + strand, within PP_0795 at 913.873 kb on - strand, within PP_0795 at 914.007 kb on + strand, within PP_0795 at 914.008 kb on - strand, within PP_0795 at 914.104 kb on - strand, within PP_0795 at 914.190 kb on + strand, within PP_0795 at 914.190 kb on + strand, within PP_0795 at 914.190 kb on + strand, within PP_0795 at 914.191 kb on - strand, within PP_0795 at 914.378 kb on + strand, within PP_0795 at 914.424 kb on + strand, within PP_0795 at 914.424 kb on + strand, within PP_0795 at 914.424 kb on + strand, within PP_0795 at 914.424 kb on + strand, within PP_0795 at 914.425 kb on - strand, within PP_0795 at 914.425 kb on - strand, within PP_0795 at 914.425 kb on - strand, within PP_0795 at 914.498 kb on - strand, within PP_0795 at 914.608 kb on - strand, within PP_0795 at 914.808 kb on - strand, within PP_0795 at 914.970 kb on + strand at 914.970 kb on + strand at 914.971 kb on - strand at 914.971 kb on - strand at 914.971 kb on - strand at 914.971 kb on - strand at 915.028 kb on + strand at 915.028 kb on + strand at 915.028 kb on + strand at 915.097 kb on + strand at 915.098 kb on - strand at 915.213 kb on + strand, within PP_0796 at 915.214 kb on - strand, within PP_0796 at 915.214 kb on - strand, within PP_0796 at 915.214 kb on - strand, within PP_0796 at 915.311 kb on - strand, within PP_0796 at 915.311 kb on - strand, within PP_0796 at 915.347 kb on - strand, within PP_0796 at 915.347 kb on - strand, within PP_0796 at 915.378 kb on + strand, within PP_0796 at 915.379 kb on - strand, within PP_0796 at 915.379 kb on - strand, within PP_0796 at 915.379 kb on - strand, within PP_0796 at 915.436 kb on + strand, within PP_0796 at 915.580 kb on - strand at 915.634 kb on + strand, within PP_0797 at 915.654 kb on + strand, within PP_0797 at 915.655 kb on - strand, within PP_0797 at 915.655 kb on - strand, within PP_0797 at 915.813 kb on - strand, within PP_0797 at 915.933 kb on + strand, within PP_0797 at 915.965 kb on - strand, within PP_0797 at 915.990 kb on + strand, within PP_0797 at 915.990 kb on + strand, within PP_0797 at 915.990 kb on + strand, within PP_0797 at 915.991 kb on - strand, within PP_0797 at 915.991 kb on - strand, within PP_0797 at 915.991 kb on - strand, within PP_0797 at 915.991 kb on - strand, within PP_0797
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic (C) remove 912,387 + +1.7 912,510 - PP_0794 0.17 +0.4 912,621 + PP_0794 0.29 +0.9 912,622 - PP_0794 0.29 -0.1 912,622 - PP_0794 0.29 +1.0 912,833 + PP_0794 0.51 -0.7 912,833 + PP_0794 0.51 +3.2 912,834 - PP_0794 0.51 +1.0 912,904 - PP_0794 0.59 +0.6 913,304 - -0.3 913,304 - -0.2 913,339 + -0.9 913,340 - -0.1 913,340 - -0.9 913,409 + -0.2 913,410 - +0.2 913,410 - +1.1 913,628 + PP_0795 0.19 -0.5 913,679 - PP_0795 0.22 +0.1 913,685 + PP_0795 0.23 +0.4 913,685 + PP_0795 0.23 -0.8 913,686 - PP_0795 0.23 -0.2 913,840 + PP_0795 0.32 -0.2 913,868 + PP_0795 0.33 -0.2 913,869 - PP_0795 0.33 +0.3 913,869 - PP_0795 0.33 +0.1 913,869 - PP_0795 0.33 -0.8 913,872 + PP_0795 0.33 -0.2 913,872 + PP_0795 0.33 -0.3 913,873 - PP_0795 0.33 +0.0 914,007 + PP_0795 0.41 +0.5 914,008 - PP_0795 0.41 +0.1 914,104 - PP_0795 0.47 +0.9 914,190 + PP_0795 0.52 +0.9 914,190 + PP_0795 0.52 -0.4 914,190 + PP_0795 0.52 +0.6 914,191 - PP_0795 0.52 +0.8 914,378 + PP_0795 0.62 -0.3 914,424 + PP_0795 0.65 +0.1 914,424 + PP_0795 0.65 +1.7 914,424 + PP_0795 0.65 -0.4 914,424 + PP_0795 0.65 +0.1 914,425 - PP_0795 0.65 +0.1 914,425 - PP_0795 0.65 -0.8 914,425 - PP_0795 0.65 -2.3 914,498 - PP_0795 0.69 -0.5 914,608 - PP_0795 0.76 -0.3 914,808 - PP_0795 0.87 +0.2 914,970 + -0.3 914,970 + +0.4 914,971 - -0.5 914,971 - +0.0 914,971 - +0.1 914,971 - +0.3 915,028 + -0.2 915,028 + -0.3 915,028 + +0.6 915,097 + +0.4 915,098 - -0.9 915,213 + PP_0796 0.11 +0.1 915,214 - PP_0796 0.12 -0.0 915,214 - PP_0796 0.12 +0.1 915,214 - PP_0796 0.12 -0.3 915,311 - PP_0796 0.45 -0.8 915,311 - PP_0796 0.45 +0.7 915,347 - PP_0796 0.58 +0.0 915,347 - PP_0796 0.58 -0.7 915,378 + PP_0796 0.69 +0.2 915,379 - PP_0796 0.69 -1.1 915,379 - PP_0796 0.69 -0.3 915,379 - PP_0796 0.69 +0.3 915,436 + PP_0796 0.89 -0.0 915,580 - -0.2 915,634 + PP_0797 0.17 -0.1 915,654 + PP_0797 0.21 +0.5 915,655 - PP_0797 0.21 -0.2 915,655 - PP_0797 0.21 +0.7 915,813 - PP_0797 0.51 -0.9 915,933 + PP_0797 0.73 -0.2 915,965 - PP_0797 0.79 +0.3 915,990 + PP_0797 0.83 -0.5 915,990 + PP_0797 0.83 -0.4 915,990 + PP_0797 0.83 -0.6 915,991 - PP_0797 0.84 -1.2 915,991 - PP_0797 0.84 -0.7 915,991 - PP_0797 0.84 +0.2 915,991 - PP_0797 0.84 -1.7
Or see this region's nucleotide sequence