Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF98

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF96 and GFF97 are separated by 47 nucleotidesGFF97 and GFF98 are separated by 26 nucleotidesGFF98 and GFF99 are separated by 8 nucleotides GFF96 - Cell wall surface anchor family protein, at 80,168 to 80,707 GFF96 GFF97 - Chaperone protein EcpD, at 80,755 to 81,438 GFF97 GFF98 - FIG100795: Fimbriae usher protein StiC, at 81,465 to 84,011 GFF98 GFF99 - Putative fimbriae, at 84,020 to 85,099 GFF99 Position (kb) 81 82 83 84 85Strain fitness (log2 ratio) -2 -1 0 1 2at 80.633 kb on + strand, within GFF96at 80.702 kb on - strandat 80.702 kb on - strandat 80.702 kb on - strandat 80.886 kb on - strand, within GFF97at 80.912 kb on + strand, within GFF97at 81.017 kb on + strand, within GFF97at 81.021 kb on - strand, within GFF97at 81.028 kb on - strand, within GFF97at 81.071 kb on - strand, within GFF97at 81.114 kb on + strand, within GFF97at 81.265 kb on + strand, within GFF97at 81.266 kb on - strand, within GFF97at 81.266 kb on - strand, within GFF97at 81.267 kb on + strand, within GFF97at 81.346 kb on + strand, within GFF97at 81.347 kb on - strand, within GFF97at 81.388 kb on - strandat 81.388 kb on - strandat 81.423 kb on + strandat 81.492 kb on + strandat 81.516 kb on - strandat 81.661 kb on - strandat 81.663 kb on + strandat 81.663 kb on + strandat 81.664 kb on - strandat 81.664 kb on - strandat 81.664 kb on - strandat 81.752 kb on - strand, within GFF98at 81.786 kb on - strand, within GFF98at 81.896 kb on - strand, within GFF98at 81.919 kb on - strand, within GFF98at 81.994 kb on - strand, within GFF98at 82.056 kb on + strand, within GFF98at 82.107 kb on + strand, within GFF98at 82.160 kb on + strand, within GFF98at 82.247 kb on - strand, within GFF98at 82.421 kb on + strand, within GFF98at 82.462 kb on + strand, within GFF98at 82.504 kb on - strand, within GFF98at 82.563 kb on - strand, within GFF98at 82.567 kb on - strand, within GFF98at 82.575 kb on + strand, within GFF98at 82.575 kb on + strand, within GFF98at 82.575 kb on + strand, within GFF98at 82.674 kb on - strand, within GFF98at 82.678 kb on - strand, within GFF98at 82.710 kb on - strand, within GFF98at 82.806 kb on + strand, within GFF98at 82.922 kb on + strand, within GFF98at 82.926 kb on + strand, within GFF98at 82.980 kb on - strand, within GFF98at 83.069 kb on + strand, within GFF98at 83.069 kb on + strand, within GFF98at 83.088 kb on + strand, within GFF98at 83.089 kb on - strand, within GFF98at 83.089 kb on - strand, within GFF98at 83.089 kb on - strand, within GFF98at 83.091 kb on - strand, within GFF98at 83.101 kb on - strand, within GFF98at 83.101 kb on - strand, within GFF98at 83.106 kb on + strand, within GFF98at 83.106 kb on + strand, within GFF98at 83.121 kb on + strand, within GFF98at 83.121 kb on + strand, within GFF98at 83.121 kb on + strand, within GFF98at 83.122 kb on - strand, within GFF98at 83.122 kb on - strand, within GFF98at 83.169 kb on + strand, within GFF98at 83.236 kb on + strand, within GFF98at 83.236 kb on + strand, within GFF98at 83.236 kb on + strand, within GFF98at 83.247 kb on + strand, within GFF98at 83.247 kb on + strand, within GFF98at 83.248 kb on - strand, within GFF98at 83.249 kb on + strand, within GFF98at 83.249 kb on + strand, within GFF98at 83.250 kb on - strand, within GFF98at 83.265 kb on - strand, within GFF98at 83.339 kb on - strand, within GFF98at 83.391 kb on + strand, within GFF98at 83.391 kb on + strand, within GFF98at 83.392 kb on - strand, within GFF98at 83.392 kb on - strand, within GFF98at 83.392 kb on - strand, within GFF98at 83.403 kb on + strand, within GFF98at 83.424 kb on + strand, within GFF98at 83.538 kb on - strand, within GFF98at 83.606 kb on + strand, within GFF98at 83.606 kb on + strand, within GFF98at 83.743 kb on - strand, within GFF98at 83.754 kb on - strand, within GFF98at 83.754 kb on - strand, within GFF98at 83.984 kb on - strandat 84.225 kb on - strand, within GFF99at 84.268 kb on + strand, within GFF99at 84.272 kb on + strand, within GFF99at 84.419 kb on + strand, within GFF99at 84.420 kb on - strand, within GFF99at 84.420 kb on - strand, within GFF99at 84.421 kb on + strand, within GFF99at 84.449 kb on - strand, within GFF99at 84.530 kb on + strand, within GFF99at 84.531 kb on - strand, within GFF99at 84.531 kb on - strand, within GFF99at 84.533 kb on - strand, within GFF99at 84.536 kb on - strand, within GFF99at 84.550 kb on - strand, within GFF99at 84.581 kb on - strand, within GFF99at 84.591 kb on - strand, within GFF99at 84.622 kb on + strand, within GFF99at 84.622 kb on + strand, within GFF99at 84.623 kb on - strand, within GFF99at 84.625 kb on + strand, within GFF99at 84.626 kb on - strand, within GFF99at 84.814 kb on + strand, within GFF99at 84.815 kb on - strand, within GFF99at 84.941 kb on - strand, within GFF99at 84.941 kb on - strand, within GFF99

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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80,633 + GFF96 0.86 +0.1
80,702 - +0.4
80,702 - -0.6
80,702 - +0.2
80,886 - GFF97 0.19 -0.5
80,912 + GFF97 0.23 -0.3
81,017 + GFF97 0.38 +0.3
81,021 - GFF97 0.39 -0.0
81,028 - GFF97 0.40 +0.3
81,071 - GFF97 0.46 +0.0
81,114 + GFF97 0.52 +0.1
81,265 + GFF97 0.75 +0.3
81,266 - GFF97 0.75 +0.3
81,266 - GFF97 0.75 -0.5
81,267 + GFF97 0.75 +0.2
81,346 + GFF97 0.86 +0.4
81,347 - GFF97 0.87 -1.2
81,388 - -0.5
81,388 - +0.3
81,423 + +0.0
81,492 + -0.5
81,516 - +0.1
81,661 - +0.1
81,663 + -2.3
81,663 + -0.4
81,664 - +0.1
81,664 - -0.0
81,664 - -0.8
81,752 - GFF98 0.11 -0.6
81,786 - GFF98 0.13 -1.7
81,896 - GFF98 0.17 +0.0
81,919 - GFF98 0.18 -0.0
81,994 - GFF98 0.21 +0.3
82,056 + GFF98 0.23 -0.3
82,107 + GFF98 0.25 -0.9
82,160 + GFF98 0.27 +0.2
82,247 - GFF98 0.31 +0.5
82,421 + GFF98 0.38 -0.8
82,462 + GFF98 0.39 +0.8
82,504 - GFF98 0.41 -0.3
82,563 - GFF98 0.43 -0.2
82,567 - GFF98 0.43 +0.4
82,575 + GFF98 0.44 +0.5
82,575 + GFF98 0.44 +0.1
82,575 + GFF98 0.44 +0.5
82,674 - GFF98 0.47 +0.0
82,678 - GFF98 0.48 +0.8
82,710 - GFF98 0.49 -1.4
82,806 + GFF98 0.53 -0.4
82,922 + GFF98 0.57 -0.0
82,926 + GFF98 0.57 +0.7
82,980 - GFF98 0.59 -0.1
83,069 + GFF98 0.63 +0.4
83,069 + GFF98 0.63 +0.6
83,088 + GFF98 0.64 -0.3
83,089 - GFF98 0.64 +0.0
83,089 - GFF98 0.64 -0.0
83,089 - GFF98 0.64 +0.8
83,091 - GFF98 0.64 +0.5
83,101 - GFF98 0.64 -0.1
83,101 - GFF98 0.64 -0.5
83,106 + GFF98 0.64 -0.5
83,106 + GFF98 0.64 -1.4
83,121 + GFF98 0.65 +1.8
83,121 + GFF98 0.65 -0.9
83,121 + GFF98 0.65 -0.8
83,122 - GFF98 0.65 +0.1
83,122 - GFF98 0.65 +1.3
83,169 + GFF98 0.67 +0.3
83,236 + GFF98 0.70 -2.0
83,236 + GFF98 0.70 +1.4
83,236 + GFF98 0.70 -1.5
83,247 + GFF98 0.70 -0.2
83,247 + GFF98 0.70 -2.6
83,248 - GFF98 0.70 +0.8
83,249 + GFF98 0.70 -1.3
83,249 + GFF98 0.70 +0.6
83,250 - GFF98 0.70 -0.4
83,265 - GFF98 0.71 +0.9
83,339 - GFF98 0.74 +0.3
83,391 + GFF98 0.76 -0.2
83,391 + GFF98 0.76 -0.4
83,392 - GFF98 0.76 +0.4
83,392 - GFF98 0.76 +0.5
83,392 - GFF98 0.76 -0.3
83,403 + GFF98 0.76 +0.2
83,424 + GFF98 0.77 +0.4
83,538 - GFF98 0.81 -0.2
83,606 + GFF98 0.84 +0.5
83,606 + GFF98 0.84 -0.9
83,743 - GFF98 0.89 -0.5
83,754 - GFF98 0.90 +0.3
83,754 - GFF98 0.90 +0.0
83,984 - +0.3
84,225 - GFF99 0.19 -0.2
84,268 + GFF99 0.23 +0.1
84,272 + GFF99 0.23 -0.4
84,419 + GFF99 0.37 -0.2
84,420 - GFF99 0.37 -0.2
84,420 - GFF99 0.37 +0.8
84,421 + GFF99 0.37 +0.4
84,449 - GFF99 0.40 -0.4
84,530 + GFF99 0.47 +0.4
84,531 - GFF99 0.47 +0.6
84,531 - GFF99 0.47 +0.2
84,533 - GFF99 0.47 -0.2
84,536 - GFF99 0.48 -2.2
84,550 - GFF99 0.49 +0.3
84,581 - GFF99 0.52 -0.2
84,591 - GFF99 0.53 +1.1
84,622 + GFF99 0.56 +0.1
84,622 + GFF99 0.56 -1.1
84,623 - GFF99 0.56 +0.1
84,625 + GFF99 0.56 -0.7
84,626 - GFF99 0.56 +0.8
84,814 + GFF99 0.74 -0.8
84,815 - GFF99 0.74 -0.3
84,941 - GFF99 0.85 -0.1
84,941 - GFF99 0.85 +0.2

Or see this region's nucleotide sequence