Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF630 and GFF631 are separated by 97 nucleotides GFF631 and GFF632 are separated by 180 nucleotides
GFF630 - 3-dehydroquinate synthase (EC 4.2.3.4), at 370,996 to 372,000
GFF630
GFF631 - DamX, an inner membrane protein involved in bile resistance, at 372,098 to 373,375
GFF631
GFF632 - Methyl-directed repair DNA adenine methylase (EC 2.1.1.72), at 373,556 to 374,392
GFF632
Position (kb) 372
373
374 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 371.137 kb on - strand, within GFF630 at 371.384 kb on - strand, within GFF630 at 371.473 kb on + strand, within GFF630 at 371.481 kb on + strand, within GFF630 at 371.566 kb on - strand, within GFF630 at 371.627 kb on + strand, within GFF630 at 371.636 kb on + strand, within GFF630 at 371.652 kb on + strand, within GFF630 at 371.652 kb on + strand, within GFF630 at 371.652 kb on + strand, within GFF630 at 371.699 kb on + strand, within GFF630 at 371.699 kb on + strand, within GFF630 at 371.725 kb on - strand, within GFF630 at 371.778 kb on + strand, within GFF630 at 371.854 kb on + strand, within GFF630 at 371.855 kb on - strand, within GFF630 at 371.888 kb on + strand, within GFF630 at 372.095 kb on + strand at 372.151 kb on + strand at 372.253 kb on + strand, within GFF631 at 372.262 kb on + strand, within GFF631 at 372.386 kb on + strand, within GFF631 at 372.387 kb on - strand, within GFF631 at 372.877 kb on + strand, within GFF631 at 373.130 kb on + strand, within GFF631 at 373.206 kb on - strand, within GFF631 at 373.212 kb on + strand, within GFF631 at 373.213 kb on - strand, within GFF631 at 373.214 kb on + strand, within GFF631 at 373.244 kb on + strand, within GFF631 at 373.265 kb on + strand at 373.265 kb on + strand at 373.265 kb on + strand at 373.265 kb on + strand at 373.265 kb on + strand at 373.265 kb on + strand at 373.266 kb on - strand at 373.266 kb on - strand at 373.286 kb on - strand at 373.419 kb on + strand at 373.419 kb on + strand at 373.494 kb on - strand at 373.541 kb on - strand at 373.544 kb on + strand at 373.703 kb on + strand, within GFF632 at 373.703 kb on + strand, within GFF632 at 373.744 kb on + strand, within GFF632 at 373.762 kb on + strand, within GFF632 at 373.762 kb on + strand, within GFF632 at 373.763 kb on - strand, within GFF632 at 373.777 kb on - strand, within GFF632 at 373.826 kb on + strand, within GFF632 at 373.827 kb on - strand, within GFF632 at 374.036 kb on + strand, within GFF632 at 374.059 kb on + strand, within GFF632 at 374.305 kb on + strand, within GFF632
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 371,137 - GFF630 0.14 -1.8 371,384 - GFF630 0.39 -2.4 371,473 + GFF630 0.47 -0.9 371,481 + GFF630 0.48 -0.8 371,566 - GFF630 0.57 -4.5 371,627 + GFF630 0.63 -0.7 371,636 + GFF630 0.64 -0.8 371,652 + GFF630 0.65 +0.7 371,652 + GFF630 0.65 -1.0 371,652 + GFF630 0.65 +0.1 371,699 + GFF630 0.70 +0.5 371,699 + GFF630 0.70 -1.5 371,725 - GFF630 0.73 -2.9 371,778 + GFF630 0.78 -0.1 371,854 + GFF630 0.85 -0.5 371,855 - GFF630 0.85 -0.2 371,888 + GFF630 0.89 +0.4 372,095 + -0.4 372,151 + -1.2 372,253 + GFF631 0.12 -2.3 372,262 + GFF631 0.13 -1.2 372,386 + GFF631 0.23 -1.7 372,387 - GFF631 0.23 -3.4 372,877 + GFF631 0.61 -0.3 373,130 + GFF631 0.81 +0.8 373,206 - GFF631 0.87 -2.5 373,212 + GFF631 0.87 -1.2 373,213 - GFF631 0.87 -1.9 373,214 + GFF631 0.87 -0.2 373,244 + GFF631 0.90 -0.2 373,265 + -1.1 373,265 + -0.6 373,265 + +0.1 373,265 + +0.2 373,265 + -0.0 373,265 + -0.5 373,266 - -2.3 373,266 - -2.2 373,286 - -1.8 373,419 + -0.5 373,419 + -0.5 373,494 - -1.8 373,541 - -1.8 373,544 + +0.0 373,703 + GFF632 0.18 -2.5 373,703 + GFF632 0.18 -2.3 373,744 + GFF632 0.22 -1.2 373,762 + GFF632 0.25 -1.5 373,762 + GFF632 0.25 -2.7 373,763 - GFF632 0.25 -3.2 373,777 - GFF632 0.26 -1.9 373,826 + GFF632 0.32 -2.9 373,827 - GFF632 0.32 -1.2 374,036 + GFF632 0.57 -0.6 374,059 + GFF632 0.60 -0.5 374,305 + GFF632 0.89 -2.0
Or see this region's nucleotide sequence