Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4687 and GFF4688 are separated by 59 nucleotides GFF4688 and GFF4689 are separated by 71 nucleotides
GFF4687 - Phage tail assembly protein, at 15,680 to 16,417
GFF4687
GFF4688 - Phage tail assembly protein I, at 16,477 to 17,019
GFF4688
GFF4689 - Phage tail fiber protein, at 17,091 to 19,538
GFF4689
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.120 kb on + strand, within GFF4687 at 16.131 kb on - strand, within GFF4687 at 16.305 kb on - strand, within GFF4687 at 16.305 kb on - strand, within GFF4687 at 16.436 kb on + strand at 16.586 kb on + strand, within GFF4688 at 16.593 kb on + strand, within GFF4688 at 17.021 kb on - strand at 17.077 kb on - strand at 17.077 kb on - strand at 17.117 kb on + strand at 17.117 kb on + strand at 17.118 kb on - strand at 17.270 kb on + strand at 17.271 kb on - strand at 17.271 kb on - strand at 17.271 kb on - strand at 17.292 kb on + strand at 17.293 kb on - strand at 17.577 kb on + strand, within GFF4689 at 17.796 kb on + strand, within GFF4689 at 17.856 kb on + strand, within GFF4689 at 17.856 kb on + strand, within GFF4689 at 17.858 kb on + strand, within GFF4689 at 17.858 kb on + strand, within GFF4689 at 17.858 kb on + strand, within GFF4689 at 17.882 kb on + strand, within GFF4689 at 17.893 kb on - strand, within GFF4689 at 17.981 kb on + strand, within GFF4689 at 17.981 kb on + strand, within GFF4689 at 17.981 kb on + strand, within GFF4689 at 17.994 kb on + strand, within GFF4689 at 18.065 kb on + strand, within GFF4689 at 18.072 kb on + strand, within GFF4689 at 18.074 kb on + strand, within GFF4689 at 18.078 kb on - strand, within GFF4689 at 18.135 kb on - strand, within GFF4689 at 18.201 kb on + strand, within GFF4689 at 18.202 kb on - strand, within GFF4689 at 18.392 kb on + strand, within GFF4689 at 18.498 kb on - strand, within GFF4689 at 18.498 kb on - strand, within GFF4689 at 18.610 kb on + strand, within GFF4689 at 18.744 kb on + strand, within GFF4689 at 18.803 kb on + strand, within GFF4689 at 18.828 kb on + strand, within GFF4689 at 18.828 kb on + strand, within GFF4689 at 18.829 kb on - strand, within GFF4689 at 18.829 kb on - strand, within GFF4689 at 18.829 kb on - strand, within GFF4689 at 18.829 kb on - strand, within GFF4689 at 18.924 kb on - strand, within GFF4689 at 19.015 kb on + strand, within GFF4689 at 19.212 kb on - strand, within GFF4689 at 19.550 kb on + strand at 19.550 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 16,120 + GFF4687 0.60 +0.4 16,131 - GFF4687 0.61 -1.3 16,305 - GFF4687 0.85 -0.8 16,305 - GFF4687 0.85 +0.3 16,436 + -0.5 16,586 + GFF4688 0.20 -0.1 16,593 + GFF4688 0.21 -0.1 17,021 - -0.9 17,077 - -0.6 17,077 - -0.0 17,117 + +1.0 17,117 + -2.1 17,118 - -0.1 17,270 + +0.3 17,271 - +0.0 17,271 - -0.6 17,271 - -1.6 17,292 + +0.4 17,293 - -0.4 17,577 + GFF4689 0.20 -0.1 17,796 + GFF4689 0.29 +0.6 17,856 + GFF4689 0.31 +0.5 17,856 + GFF4689 0.31 -1.1 17,858 + GFF4689 0.31 -0.5 17,858 + GFF4689 0.31 -2.2 17,858 + GFF4689 0.31 -0.8 17,882 + GFF4689 0.32 -0.7 17,893 - GFF4689 0.33 +0.1 17,981 + GFF4689 0.36 +1.2 17,981 + GFF4689 0.36 -0.2 17,981 + GFF4689 0.36 +1.4 17,994 + GFF4689 0.37 -0.3 18,065 + GFF4689 0.40 +0.3 18,072 + GFF4689 0.40 -0.0 18,074 + GFF4689 0.40 -0.2 18,078 - GFF4689 0.40 +0.8 18,135 - GFF4689 0.43 +0.5 18,201 + GFF4689 0.45 +0.8 18,202 - GFF4689 0.45 +0.6 18,392 + GFF4689 0.53 +0.2 18,498 - GFF4689 0.57 +0.7 18,498 - GFF4689 0.57 -0.3 18,610 + GFF4689 0.62 +0.6 18,744 + GFF4689 0.68 -0.0 18,803 + GFF4689 0.70 +0.8 18,828 + GFF4689 0.71 -0.6 18,828 + GFF4689 0.71 -0.8 18,829 - GFF4689 0.71 +1.3 18,829 - GFF4689 0.71 -1.9 18,829 - GFF4689 0.71 +0.5 18,829 - GFF4689 0.71 +0.8 18,924 - GFF4689 0.75 +0.0 19,015 + GFF4689 0.79 -0.8 19,212 - GFF4689 0.87 -0.7 19,550 + -0.3 19,550 + +1.8
Or see this region's nucleotide sequence