Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4293 and GFF4294 overlap by 4 nucleotides GFF4294 and GFF4295 are separated by 41 nucleotides GFF4295 and GFF4296 are separated by 41 nucleotides GFF4296 and GFF4297 are separated by 69 nucleotides
GFF4293 - Exonuclease SbcC, at 76,453 to 79,593
GFF4293
GFF4294 - Exonuclease SbcD, at 79,590 to 80,792
GFF4294
GFF4295 - hypothetical protein, at 80,834 to 80,965
GFF4295
GFF4296 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 81,007 to 81,696
GFF4296
GFF4297 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 81,766 to 83,061
GFF4297
Position (kb) 79
80
81 Strain fitness (log2 ratio) -1
0
1 at 78.794 kb on + strand, within GFF4293 at 78.795 kb on - strand, within GFF4293 at 78.940 kb on + strand, within GFF4293 at 78.986 kb on - strand, within GFF4293 at 79.201 kb on - strand, within GFF4293 at 79.207 kb on + strand, within GFF4293 at 79.208 kb on - strand, within GFF4293 at 79.722 kb on + strand, within GFF4294 at 79.785 kb on + strand, within GFF4294 at 79.788 kb on + strand, within GFF4294 at 79.788 kb on + strand, within GFF4294 at 79.789 kb on - strand, within GFF4294 at 80.193 kb on - strand, within GFF4294 at 80.194 kb on + strand, within GFF4294 at 80.194 kb on + strand, within GFF4294 at 80.238 kb on + strand, within GFF4294 at 80.381 kb on + strand, within GFF4294 at 80.451 kb on + strand, within GFF4294 at 80.584 kb on - strand, within GFF4294 at 80.741 kb on + strand at 80.793 kb on - strand at 80.793 kb on - strand at 80.827 kb on - strand at 80.828 kb on + strand at 80.828 kb on + strand at 80.829 kb on - strand at 80.829 kb on - strand at 80.965 kb on + strand at 80.982 kb on + strand at 80.987 kb on - strand at 80.987 kb on - strand at 81.109 kb on + strand, within GFF4296 at 81.110 kb on - strand, within GFF4296 at 81.234 kb on + strand, within GFF4296 at 81.311 kb on - strand, within GFF4296 at 81.543 kb on - strand, within GFF4296 at 81.713 kb on - strand at 81.758 kb on + strand at 81.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 78,794 + GFF4293 0.75 -0.2 78,795 - GFF4293 0.75 +0.5 78,940 + GFF4293 0.79 -1.2 78,986 - GFF4293 0.81 -0.5 79,201 - GFF4293 0.87 +0.4 79,207 + GFF4293 0.88 +1.1 79,208 - GFF4293 0.88 +0.2 79,722 + GFF4294 0.11 -0.2 79,785 + GFF4294 0.16 -0.3 79,788 + GFF4294 0.16 +0.5 79,788 + GFF4294 0.16 -0.2 79,789 - GFF4294 0.17 -0.3 80,193 - GFF4294 0.50 -0.5 80,194 + GFF4294 0.50 +0.4 80,194 + GFF4294 0.50 +0.1 80,238 + GFF4294 0.54 -0.3 80,381 + GFF4294 0.66 +0.2 80,451 + GFF4294 0.72 -0.2 80,584 - GFF4294 0.83 +0.7 80,741 + -1.2 80,793 - -0.9 80,793 - -0.2 80,827 - -0.4 80,828 + -0.8 80,828 + +0.0 80,829 - -0.5 80,829 - -0.1 80,965 + +0.0 80,982 + +0.6 80,987 - -0.6 80,987 - -0.1 81,109 + GFF4296 0.15 +0.6 81,110 - GFF4296 0.15 -0.4 81,234 + GFF4296 0.33 +0.6 81,311 - GFF4296 0.44 +0.0 81,543 - GFF4296 0.78 +0.0 81,713 - +0.1 81,758 + -0.1 81,759 - -0.0
Or see this region's nucleotide sequence