Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4030

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4029 and GFF4030 are separated by 78 nucleotides GFF4029 - Flagellar biosynthesis protein FliC, at 295,708 to 297,195 GFF4029 GFF4030 - Lysine-N-methylase (EC 2.1.1.-), at 297,274 to 298,479 GFF4030 Position (kb) 297 298 299Strain fitness (log2 ratio) -2 -1 0 1at 296.395 kb on + strand, within GFF4029at 296.508 kb on + strand, within GFF4029at 296.631 kb on + strand, within GFF4029at 296.641 kb on + strand, within GFF4029at 296.642 kb on - strand, within GFF4029at 296.704 kb on + strand, within GFF4029at 296.739 kb on + strand, within GFF4029at 296.742 kb on + strand, within GFF4029at 296.913 kb on + strand, within GFF4029at 297.018 kb on + strand, within GFF4029at 297.018 kb on + strand, within GFF4029at 297.038 kb on + strand, within GFF4029at 297.185 kb on + strandat 297.223 kb on + strandat 297.609 kb on + strand, within GFF4030at 297.631 kb on - strand, within GFF4030at 297.631 kb on - strand, within GFF4030at 297.826 kb on + strand, within GFF4030at 297.850 kb on + strand, within GFF4030at 297.850 kb on + strand, within GFF4030at 297.850 kb on + strand, within GFF4030at 297.851 kb on - strand, within GFF4030at 297.907 kb on + strand, within GFF4030at 298.050 kb on + strand, within GFF4030at 298.269 kb on + strand, within GFF4030at 298.272 kb on + strand, within GFF4030at 298.293 kb on + strand, within GFF4030at 298.301 kb on + strand, within GFF4030at 298.336 kb on - strand, within GFF4030at 298.368 kb on + strandat 298.427 kb on + strandat 298.427 kb on + strandat 298.428 kb on - strandat 298.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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296,395 + GFF4029 0.46 +1.4
296,508 + GFF4029 0.54 -0.2
296,631 + GFF4029 0.62 +0.4
296,641 + GFF4029 0.63 -0.7
296,642 - GFF4029 0.63 -2.3
296,704 + GFF4029 0.67 +0.4
296,739 + GFF4029 0.69 +0.3
296,742 + GFF4029 0.69 +0.2
296,913 + GFF4029 0.81 +0.1
297,018 + GFF4029 0.88 -1.5
297,018 + GFF4029 0.88 +0.4
297,038 + GFF4029 0.89 +0.3
297,185 + +1.0
297,223 + -0.0
297,609 + GFF4030 0.28 -2.7
297,631 - GFF4030 0.30 +0.2
297,631 - GFF4030 0.30 -1.2
297,826 + GFF4030 0.46 -0.5
297,850 + GFF4030 0.48 -1.2
297,850 + GFF4030 0.48 -0.9
297,850 + GFF4030 0.48 -0.3
297,851 - GFF4030 0.48 +0.8
297,907 + GFF4030 0.52 -0.6
298,050 + GFF4030 0.64 +0.4
298,269 + GFF4030 0.83 -0.7
298,272 + GFF4030 0.83 -0.1
298,293 + GFF4030 0.84 -0.1
298,301 + GFF4030 0.85 -0.3
298,336 - GFF4030 0.88 -2.0
298,368 + +0.5
298,427 + -0.6
298,427 + +0.0
298,428 - -0.7
298,441 - -0.1

Or see this region's nucleotide sequence