Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3545

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3544 and GFF3545 are separated by 462 nucleotidesGFF3545 and GFF3546 are separated by 75 nucleotides GFF3544 - Electron transfer flavoprotein, beta subunit, at 296,563 to 297,327 GFF3544 GFF3545 - Transcriptional regulator, AraC family, at 297,790 to 298,680 GFF3545 GFF3546 - Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-), at 298,756 to 299,907 GFF3546 Position (kb) 297 298 299Strain fitness (log2 ratio) -2 -1 0 1at 296.899 kb on + strand, within GFF3544at 297.280 kb on - strandat 297.307 kb on - strandat 298.064 kb on - strand, within GFF3545at 298.799 kb on + strandat 298.800 kb on - strandat 298.800 kb on - strandat 298.800 kb on - strandat 298.831 kb on - strandat 298.831 kb on - strandat 298.883 kb on + strand, within GFF3546at 299.019 kb on + strand, within GFF3546at 299.286 kb on + strand, within GFF3546at 299.418 kb on - strand, within GFF3546at 299.418 kb on - strand, within GFF3546at 299.536 kb on + strand, within GFF3546

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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296,899 + GFF3544 0.44 -0.5
297,280 - +0.4
297,307 - -0.1
298,064 - GFF3545 0.31 -2.3
298,799 + -1.9
298,800 - -0.7
298,800 - -0.3
298,800 - +0.5
298,831 - +1.0
298,831 - +0.7
298,883 + GFF3546 0.11 +0.1
299,019 + GFF3546 0.23 -0.7
299,286 + GFF3546 0.46 -1.2
299,418 - GFF3546 0.57 -0.4
299,418 - GFF3546 0.57 +1.5
299,536 + GFF3546 0.68 +0.5

Or see this region's nucleotide sequence