Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1915

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1914 and GFF1915 are separated by 51 nucleotidesGFF1915 and GFF1916 are separated by 10 nucleotidesGFF1916 and GFF1917 overlap by 4 nucleotides GFF1914 - Cell division inhibitor, at 107,576 to 108,469 GFF1914 GFF1915 - Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1), at 108,521 to 109,297 GFF1915 GFF1916 - Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1), at 109,308 to 110,015 GFF1916 GFF1917 - Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1), at 110,012 to 110,698 GFF1917 Position (kb) 108 109 110Strain fitness (log2 ratio) -3 -2 -1 0 1at 107.561 kb on + strandat 107.575 kb on + strandat 107.924 kb on + strand, within GFF1914at 108.892 kb on - strand, within GFF1915at 109.034 kb on + strand, within GFF1915at 109.035 kb on - strand, within GFF1915at 109.142 kb on - strand, within GFF1915at 109.192 kb on + strand, within GFF1915at 109.278 kb on - strandat 109.372 kb on + strandat 109.383 kb on + strand, within GFF1916at 109.383 kb on + strand, within GFF1916at 109.388 kb on - strand, within GFF1916at 109.388 kb on - strand, within GFF1916at 109.440 kb on - strand, within GFF1916at 109.548 kb on + strand, within GFF1916at 109.565 kb on + strand, within GFF1916at 109.583 kb on + strand, within GFF1916at 109.698 kb on + strand, within GFF1916at 109.767 kb on - strand, within GFF1916at 109.769 kb on - strand, within GFF1916at 109.781 kb on - strand, within GFF1916at 109.792 kb on - strand, within GFF1916at 109.798 kb on - strand, within GFF1916at 110.057 kb on + strandat 110.087 kb on - strand, within GFF1917at 110.101 kb on + strand, within GFF1917at 110.102 kb on - strand, within GFF1917at 110.102 kb on - strand, within GFF1917at 110.102 kb on - strand, within GFF1917at 110.253 kb on + strand, within GFF1917at 110.275 kb on + strand, within GFF1917

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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107,561 + +0.2
107,575 + +0.3
107,924 + GFF1914 0.39 -1.3
108,892 - GFF1915 0.48 -0.2
109,034 + GFF1915 0.66 -0.1
109,035 - GFF1915 0.66 -3.5
109,142 - GFF1915 0.80 -2.4
109,192 + GFF1915 0.86 +0.2
109,278 - -0.7
109,372 + +0.2
109,383 + GFF1916 0.11 -0.5
109,383 + GFF1916 0.11 +0.6
109,388 - GFF1916 0.11 +0.7
109,388 - GFF1916 0.11 +0.1
109,440 - GFF1916 0.19 +0.7
109,548 + GFF1916 0.34 -0.0
109,565 + GFF1916 0.36 +0.0
109,583 + GFF1916 0.39 +0.4
109,698 + GFF1916 0.55 -0.4
109,767 - GFF1916 0.65 +0.3
109,769 - GFF1916 0.65 -0.3
109,781 - GFF1916 0.67 -0.6
109,792 - GFF1916 0.68 +0.3
109,798 - GFF1916 0.69 +0.7
110,057 + +0.1
110,087 - GFF1917 0.11 +0.4
110,101 + GFF1917 0.13 -0.0
110,102 - GFF1917 0.13 +0.4
110,102 - GFF1917 0.13 +1.3
110,102 - GFF1917 0.13 -1.0
110,253 + GFF1917 0.35 -1.4
110,275 + GFF1917 0.38 -0.5

Or see this region's nucleotide sequence