Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1743 and GFF1744 overlap by 32 nucleotides GFF1744 and GFF1745 are separated by 392 nucleotides GFF1745 and GFF1746 are separated by 247 nucleotides
GFF1743 - Putative LysR-family transcriptional regulator YidZ, at 43,647 to 44,606
GFF1743
GFF1744 - Putative transport protein, at 44,575 to 45,762
GFF1744
GFF1745 - FIG01045690: hypothetical protein, at 46,155 to 46,316
GFF1745
GFF1746 - Retron-type RNA-directed DNA polymerase (EC 2.7.7.49), at 46,564 to 47,499
GFF1746
Position (kb) 44
45
46 Strain fitness (log2 ratio) -1
0
1 at 43.615 kb on + strand at 43.686 kb on + strand at 43.687 kb on - strand at 43.706 kb on + strand at 43.715 kb on + strand at 43.716 kb on - strand at 43.728 kb on + strand at 43.731 kb on + strand at 43.731 kb on + strand at 43.832 kb on - strand, within GFF1743 at 43.964 kb on + strand, within GFF1743 at 43.991 kb on + strand, within GFF1743 at 43.991 kb on + strand, within GFF1743 at 44.070 kb on + strand, within GFF1743 at 44.086 kb on - strand, within GFF1743 at 44.276 kb on + strand, within GFF1743 at 44.277 kb on - strand, within GFF1743 at 44.397 kb on - strand, within GFF1743 at 44.506 kb on - strand, within GFF1743 at 44.553 kb on + strand at 44.553 kb on + strand at 44.560 kb on - strand at 44.560 kb on - strand at 44.565 kb on + strand at 44.576 kb on + strand at 44.659 kb on + strand at 44.664 kb on + strand at 44.665 kb on - strand at 44.665 kb on - strand at 44.691 kb on + strand at 44.691 kb on + strand at 44.856 kb on + strand, within GFF1744 at 44.948 kb on - strand, within GFF1744 at 44.948 kb on - strand, within GFF1744 at 45.191 kb on - strand, within GFF1744 at 45.258 kb on + strand, within GFF1744 at 45.279 kb on + strand, within GFF1744 at 45.281 kb on + strand, within GFF1744 at 45.313 kb on - strand, within GFF1744 at 45.357 kb on + strand, within GFF1744 at 45.437 kb on + strand, within GFF1744 at 45.438 kb on - strand, within GFF1744 at 45.528 kb on + strand, within GFF1744 at 45.698 kb on + strand at 45.699 kb on - strand at 45.702 kb on + strand at 45.703 kb on - strand at 45.703 kb on - strand at 45.720 kb on - strand at 45.724 kb on + strand at 45.725 kb on - strand at 45.862 kb on - strand at 45.993 kb on - strand at 46.028 kb on - strand at 46.032 kb on - strand at 46.274 kb on + strand, within GFF1745
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 43,615 + +0.2 43,686 + -0.2 43,687 - -0.5 43,706 + +0.2 43,715 + -0.0 43,716 - -0.1 43,728 + +0.7 43,731 + +0.6 43,731 + +0.3 43,832 - GFF1743 0.19 +0.2 43,964 + GFF1743 0.33 +0.5 43,991 + GFF1743 0.36 -0.1 43,991 + GFF1743 0.36 -0.5 44,070 + GFF1743 0.44 +0.3 44,086 - GFF1743 0.46 +0.4 44,276 + GFF1743 0.66 -0.1 44,277 - GFF1743 0.66 -0.5 44,397 - GFF1743 0.78 +0.5 44,506 - GFF1743 0.89 -0.2 44,553 + -0.1 44,553 + -0.2 44,560 - -0.0 44,560 - -0.3 44,565 + +0.2 44,576 + -0.2 44,659 + +0.1 44,664 + +0.2 44,665 - -0.7 44,665 - +0.0 44,691 + -0.8 44,691 + -0.2 44,856 + GFF1744 0.24 -0.3 44,948 - GFF1744 0.31 +0.3 44,948 - GFF1744 0.31 -0.0 45,191 - GFF1744 0.52 +0.7 45,258 + GFF1744 0.57 +0.6 45,279 + GFF1744 0.59 -0.3 45,281 + GFF1744 0.59 +0.9 45,313 - GFF1744 0.62 +0.5 45,357 + GFF1744 0.66 -0.1 45,437 + GFF1744 0.73 +1.6 45,438 - GFF1744 0.73 +0.5 45,528 + GFF1744 0.80 +0.2 45,698 + +0.3 45,699 - +0.9 45,702 + -0.2 45,703 - -0.6 45,703 - -0.7 45,720 - -1.1 45,724 + -0.1 45,725 - -0.2 45,862 - +0.5 45,993 - +0.7 46,028 - -0.2 46,032 - +0.0 46,274 + GFF1745 0.73 +0.6
Or see this region's nucleotide sequence